Scaffold Ga0212123_10013767

Overview

Basic Information

• Taxon OID: 3300022557
• Scaffold ID: Ga0212123_10013767
• Source Dataset Name: Paint Pots_combined assembly
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 10480
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (83.33%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic → Iron-Sulfur Acid Spring → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Source Dataset Sampling Location

• Location Name: Canada: Banff, British Columbia
• Coordinates
  • Lat. (^o): 51.1699
  • Long. (^o): -116.1578

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001432	Metagenome / Metatranscriptome	696	Y
F033311	Metagenome	177	Y
F044616	Metagenome	154	Y
F102879	Metagenome	101	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0212123_1001376710	F033311	GGAGG	MDDVNSVMSAREKARSFLVQGKTVIAAGLMLRLIETEPTPENLELLADIYMQQGLFDYAAALYLRVVKAGLK
Ga0212123_100137674	F102879	GGAGG	MRSSNPAERLAAALLIPGVLAQRLRELSDFNLGQLLEDEVWSNLNLLAPESTICLAAVDRLRGHVSRPHKPNESEGGI
Ga0212123_100137677	F001432	AGGAGG	MSLTKRYLRDGKNRIIGSITSGYSDSSSVVRDDHEQIAGRTNERFNTVRDAHGNLVSINSSDPGLLIRRKK
Ga0212123_100137678	F044616	GAG	MTLRSSSPTERIECLLCCGMGELTRAEVLDRLGVKDFARVAQLSAEEAFRLLQSKHDREHQTAWSRFETELAKRTAELRERLNNELRLALSEKESLSRRFEDSLREIAQIREKNHELEAQMSKVARVGKREEMDFADEARTWAGICVSEKLPRNGDFILAYRAPNGDPTEPNILIDNKDKSVIAESDIDKLIRDSHERSIPIAALVARDESQLRQIDRECRWSRKEGVWLLRTTRQWLPRDLDVLKPIFERMRVQGFDLLERNAVLAEELRRTFPEIDRMEKELLKATKAIQSVSVLVGRYRERLRDLCDAAASAKIAPKPEHDGSLTAASRQ