Basic Information | |
---|---|
Taxon OID | 3300022557 Open in IMG/M |
Scaffold ID | Ga0212123_10004239 Open in IMG/M |
Source Dataset Name | Paint Pots_combined assembly |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
---|---|
Scaffold Length (bps) | 27868 |
Total Scaffold Genes | 31 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 25 (80.65%) |
Novel Protein Genes | 4 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 4 (100.00%) |
Associated Families | 4 |
Taxonomy | |
---|---|
All Organisms → cellular organisms → Bacteria | (Source: IMG/M) |
Source Dataset Ecosystem |
---|
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic → Iron-Sulfur Acid Spring → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii) |
Source Dataset Sampling Location | ||||||||
---|---|---|---|---|---|---|---|---|
Location Name | Canada: Banff, British Columbia | |||||||
Coordinates | Lat. (o) | 51.1699 | Long. (o) | -116.1578 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F003337 | Metagenome / Metatranscriptome | 493 | Y |
F004095 | Metagenome / Metatranscriptome | 453 | Y |
F014407 | Metagenome / Metatranscriptome | 263 | Y |
F042194 | Metagenome / Metatranscriptome | 158 | Y |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
Ga0212123_1000423918 | F014407 | GGAGG | VRVFSCCLFLVLSTLGVAFGQDTNFPTGPQYLMNYDSMRNGSPFLRPISTPTMSLTDPPLEVGASNATGVLVAGAGNQTVLPPSLDALPQTDLFPIFYGEPTASIIEISFLSEPSANESPASIFDTGVWQITTAQALRERGYGISLVEGAAYGKAHTRHANRVYTNADIDRLHHGT |
Ga0212123_1000423928 | F042194 | AGGAGG | MGFCAVVLESDSRLARSLAGGLSSHFNPIHLTRSGDELREQVAGKRPEVVILDMEYSRLTDVRNLHHDFPSLPIVCTYRVPDEELWIAAMEAGASDVCPVDDVQNVLSSALRSVAFAKSAAA |
Ga0212123_100042396 | F003337 | GGA | MRVPALHNSFCWVMVVLCPLSLVAGDATNGAAMVHSKGGVWVNGNEVADSTAVFPGDLLETKPGSFANLDAEGSSVLIQPESVVKFQGNSLNLEHGSVSVGTSTAMSVRVNCIKVEPASHERTQYDTADVSGTVKVAAHKYDVNITQTIALRKAARPDTNSSQSAVVHEGEQVTRNEAATCGSPLRPAGASNGLNTKWLEIGGAVGGTVALCLLLCKGSKPGSVSPSQP |
Ga0212123_100042397 | F004095 | GGAG | MSGINGDKARFNRRRRQKISRRQSNQKMLQALAEKNLVAPAAQSNAKGKVA |
⦗Top⦘ |