NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0212123_10003186

Scaffold Ga0212123_10003186


Overview

Basic Information
Taxon OID3300022557 Open in IMG/M
Scaffold IDGa0212123_10003186 Open in IMG/M
Source Dataset NamePaint Pots_combined assembly
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)35278
Total Scaffold Genes25 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)19 (76.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic → Iron-Sulfur Acid Spring → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Source Dataset Sampling Location
Location NameCanada: Banff, British Columbia
CoordinatesLat. (o)51.1699Long. (o)-116.1578Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002638Metagenome / Metatranscriptome541Y
F011042Metagenome / Metatranscriptome296Y
F016337Metagenome / Metatranscriptome248Y
F034282Metagenome175Y

Sequences

Protein IDFamilyRBSSequence
Ga0212123_100031861F034282GGAMLMATLTSCVVAVAAAEEQPAPAAKNARILLVPRKMISGDRTTLAVLDMNGRLTPGVTIAFSNGDHVTTNATGRGLFVAPLTPGVLYATIQGRTGRVQTLVIAAPANASTPSVLQAPHFASLSDRFELQGHGFCGDADKNTVQVNGEAALVMASSSESITILPPEDLQPGPADVTVTCNKGPASAARLTFLSLWLQADTSPMQPGQKRTLSVRIEGTRDKVTLEARNLAPEIAELAGGNPAKALSSGGAENVASFPLTGKQHGNILVSIRLMPWAIRSKT
Ga0212123_1000318611F016337GGAGGMQNTVTSVLGFLMLFSSASQQERPRELKGAGHMLGETAERFFSEDVVGQLLVACQAGDWKAVKQLAKAVNPASKPNAKDICSNAAIVKQQATSGARQQYGGGDDKAMRKDTFTLDGGYLVRIDMVFNVSTTDVEGYHPKYFAELFEGLRETYGEPSKSYTEPVFDVYGIKYDAHRAEWMGKQDVITIIEQPGRNGRTEIVVETLAERNRATKAPKTANPLQ
Ga0212123_1000318613F002638AGAAGGMKDAVLKYPIWQEPYRAAVIEINPTLLKLKIAAAEQAAKLRFKQLENGTDHHHELIALTDALTALKILAETNWAE
Ga0212123_100031869F011042AGGAGGVQETIIFNGTIIGEGQRVECEVRATKTTLDGDSSVFSNYRIMESDLTDSLPDGNYELLVNRERTRFSRDAGRFLSRPY

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