Basic Information | |
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Taxon OID | 3300022557 Open in IMG/M |
Scaffold ID | Ga0212123_10002497 Open in IMG/M |
Source Dataset Name | Paint Pots_combined assembly |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 43677 |
Total Scaffold Genes | 41 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 32 (78.05%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (100.00%) |
Associated Families | 3 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae | (Source: IMG/M) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic → Iron-Sulfur Acid Spring → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii) |
Source Dataset Sampling Location | ||||||||
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Location Name | Canada: Banff, British Columbia | |||||||
Coordinates | Lat. (o) | 51.1699 | Long. (o) | -116.1578 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F005311 | Metagenome / Metatranscriptome | 405 | Y |
F005887 | Metagenome / Metatranscriptome | 387 | Y |
F008092 | Metagenome / Metatranscriptome | 339 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0212123_1000249730 | F005311 | GGAGG | MGSGICGAALVRAANAMLTALGGDQVSLLLPAAATASDAAGQLGLVDPGVQQVIITPVVATNVPTGHLGPARRIEFTLPASAIEVQLPTLGMGSAENLFNAVLGLVYDGDIFHIEAVVTENFAGTAYFYVVTAVE |
Ga0212123_1000249734 | F005887 | AGG | MAVSDRELVLKAIDIEFQREVLDKLVRLETKMDALVGNGQPGRMKMAEDKVAVLERNDLRNSVHNRIVNGAISAAISVAIALHKYWLK |
Ga0212123_1000249735 | F008092 | AGGAG | MTTIQSTTIVTNLKSLSASTANTSKSAGAGGLDMAGMLALALSKANELKVCLTLVVRFTDSADPNLITLNDILASLS |
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