Scaffold Ga0212123_10002383

Overview

Basic Information

• Taxon OID: 3300022557
• Scaffold ID: Ga0212123_10002383
• Source Dataset Name: Paint Pots_combined assembly
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 45609
• Total Scaffold Genes: 57
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 47 (82.46%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic → Iron-Sulfur Acid Spring → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Source Dataset Sampling Location

• Location Name: Canada: Banff, British Columbia
• Coordinates
  • Lat. (^o): 51.1699
  • Long. (^o): -116.1578

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000208	Metagenome / Metatranscriptome	1593	Y
F002102	Metagenome / Metatranscriptome	593	Y
F002560	Metagenome / Metatranscriptome	548	Y
F003228	Metagenome / Metatranscriptome	499	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0212123_1000238317	F003228	AGGAG	MEMESESPTNHEPLSSEEAAARAAILAECEKFAAAGITFIGVHFDGSGDSGVTEEVKCFDSDYYAYDEHEPVDYDTTCLQEQFEALVPFGYEDDCGGFGDVILNVKARKITVERNDRFEDYTTSTYEV
Ga0212123_100023832	F002102	AGGAG	MSKDEKENRSKPESGALDKFEPGGELGPLDDRNEYEQRLHSLPLGQKELAQESTRFADLCQYFSQQKMDIPPSIVERLGNVSNLPAPDRIRAMKDINRELMEYLNDVGQDPGIRQ
Ga0212123_1000238323	F002560	AGGAGG	MLEQNPPTPADRSHAPVIPLPIALYVSGELIFELYDGGQPCRKFSIRWERFVPEKENPPEGAPQTVLHTRQD
Ga0212123_1000238324	F000208	GAGG	MRIRVTTRANLFEKRKQQHIERGYRIEEERPIPVNGLCSFIAVSETSDSEGVGDLAAQALNGMAK