NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0212123_10001249

Scaffold Ga0212123_10001249


Overview

Basic Information
Taxon OID3300022557 Open in IMG/M
Scaffold IDGa0212123_10001249 Open in IMG/M
Source Dataset NamePaint Pots_combined assembly
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)72535
Total Scaffold Genes68 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)55 (80.88%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic → Iron-Sulfur Acid Spring → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Source Dataset Sampling Location
Location NameCanada: Banff, British Columbia
CoordinatesLat. (o)51.1699Long. (o)-116.1578Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001621Metagenome / Metatranscriptome662Y
F032359Metagenome / Metatranscriptome180Y
F063959Metagenome / Metatranscriptome129Y
F105588Metagenome / Metatranscriptome100Y

Sequences

Protein IDFamilyRBSSequence
Ga0212123_1000124927F032359AGGAGMAWLIRKLRIPASESSMGLVLTFCIISMGLMSVALLWQAQIIANQREAIQWLETLKFGG
Ga0212123_1000124932F105588GGAGGMIRIGALIAAVTASLLLWHECGEDIGVFCYRIGLGAFTTLRSRTLVPVPIPAQTIARTRTECSNRSAISSTLFMTSKD
Ga0212123_1000124935F001621AGGAGMNSQVPKYVTQGRAALLLGISEAELSRLSHESGLGHKECAGDQEETFFTYEELRKICLLTVHHVH
Ga0212123_1000124943F063959AGGAGGMERFLVCNNPKCRFILDRRINGKSADGAQLILKKCPACGGAWSSTCPSCSQALAVKVVGGLPHSACCDQKPHANARAA

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