NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0212123_10001117

Scaffold Ga0212123_10001117


Overview

Basic Information
Taxon OID3300022557 Open in IMG/M
Scaffold IDGa0212123_10001117 Open in IMG/M
Source Dataset NamePaint Pots_combined assembly
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)77718
Total Scaffold Genes79 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)50 (63.29%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic → Iron-Sulfur Acid Spring → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Source Dataset Sampling Location
Location NameCanada: Banff, British Columbia
CoordinatesLat. (o)51.1699Long. (o)-116.1578Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000828Metagenome / Metatranscriptome872Y
F055955Metagenome / Metatranscriptome138Y
F103602Metagenome / Metatranscriptome101N

Sequences

Protein IDFamilyRBSSequence
Ga0212123_1000111756F000828GGAGMSIFDEQYRVVAIEDDRLVIRGTLSGDVLTIINPEPQTPLTKEDYPLGKLIALTDPSQTPLN
Ga0212123_1000111759F055955N/AMTTIRRVNPPRVPVAIGAMLLTALLPLASIPRCAAQNQIRVIEILADKDSRYKIGRQASPTLTFKAGEEVQFRITAKKAKTLNRNGSIHGFALIRKKDGAKFPDWDLELKPGTQEFILKVPSEPGEYEIVCTVICSEGHEDMHMKVIVIA
Ga0212123_1000111778F103602N/AMDIDIKERIAALCAKVIAAPDRSEEFVCAMEELNSALSEHAENLRSQIASLRQKGFPHSSDTRER

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