Scaffold Ga0212123_10001058

Overview

Basic Information

• Taxon OID: 3300022557
• Scaffold ID: Ga0212123_10001058
• Source Dataset Name: Paint Pots_combined assembly
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 80569
• Total Scaffold Genes: 73
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 53 (72.60%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic → Iron-Sulfur Acid Spring → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Source Dataset Sampling Location

• Location Name: Canada: Banff, British Columbia
• Coordinates
  • Lat. (^o): 51.1699
  • Long. (^o): -116.1578

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000634	Metagenome / Metatranscriptome	971	Y
F001133	Metagenome / Metatranscriptome	767	Y
F008141	Metagenome / Metatranscriptome	338	Y
F008761	Metagenome / Metatranscriptome	328	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0212123_1000105824	F008141	GGA	VRLVRLAQIAMLVCIALYVAAGEMLKLKVAGNPADALFHALSFISISVVGATVVVRRTLVLPSEALLLRSEDSLTVKRWQAGHLLLYALCEVLGLFGLILRIDGFTLGNVWGFYLGAFLLLLLYSPRPPHLDFRKRF
Ga0212123_1000105827	F000634	AGGAGG	LPATGQKTAPIAAQRSTIKILYAESDEKALASQTAEMTKVGHHVTTAVGRRAVQDALKGDAFDLVILGPTVSKEDRHHLPYMVKKAHGGTKVLVMHAGTHHHEVDASVDPNISMNRILEKIAGMLQPTPAR
Ga0212123_1000105867	F001133	GAG	MWIEKLAGGVLELDTPIGPRYLQPSLMQRAFLLWTFRNFCSLPQAVLRPWERRLIDRLWTDNRFVSLSAPGMMDRPVIGKLERRPPQADVEVLPLRQPVSSSESPEPSREAASA
Ga0212123_1000105872	F008761	AGG	VARQQNDLEALRDMIGEAHDILRAVSLPEERSQRADELLTAALHLADHLLEVSPAAVIGAKGGSQTAKRGSAYFRKIASMRREKKGGRPTKDRKPN