Scaffold Ga0212123

Basic Information
Taxon OID	3300022557 Open in IMG/M
Scaffold ID	Ga0212123_10000896 Open in IMG/M
Source Dataset Name	Paint Pots_combined assembly
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300022557 Open in IMG/M

Scaffold ID

Ga0212123_10000896 Open in IMG/M

Source Dataset Name

Paint Pots_combined assembly

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	89693
Total Scaffold Genes	96 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	73 (76.04%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	5 (83.33%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

89693

Total Scaffold Genes

96 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

73 (76.04%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

5 (83.33%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: IMG/M)

Taxonomy

All Organisms → cellular organisms → Bacteria

(Source: IMG/M)

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic → Iron-Sulfur Acid Spring → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Source Dataset Ecosystem

Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic → Iron-Sulfur Acid Spring → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Source Dataset Sampling Location
Location Name	Canada: Banff, British Columbia
Coordinates	Lat. (^o)	51.1699	Long. (^o)	-116.1578	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Canada: Banff, British Columbia

Coordinates

Lat. (^o)

51.1699

Long. (^o)

-116.1578

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F000281	Metagenome / Metatranscriptome	1382	Y
F010268	Metagenome / Metatranscriptome	306	Y
F020407	Metagenome / Metatranscriptome	224	Y
F026653	Metagenome / Metatranscriptome	197	Y
F028236	Metagenome / Metatranscriptome	192	Y
F072557	Metagenome	121	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0212123_1000089610	F072557	GGAGG	MLREDFEKRPDIGFRRTVADHLLEPLSPFDANSVRRPQRWFVLSSIVSLAAVGSVVYFNFWN
Ga0212123_1000089611	F026653	AGGA	VLLRLEAFVFLFAMMLAVTLEGAWVYWMCGHPRPYATTEGSLNFVGEWTGLALPQGWLLGAFVLIYCVTAMFVPPGRWTDNEFLHNRRAFLRLWRWAMALVAMQGLTLFLGRAAATV
Ga0212123_1000089628	F028236	GAG	VDSHATVIIPLDDRVVFVSSLNCAEFSSRLSEVAQTLDAISGTQFLAGGSWLRERWPLGT
Ga0212123_100008966	F010268	GAGG	MATMIASPPDEKTSQASSRLAGKGNRRARPAGEDETMSGARFFLPKSGVNGHAPELGREFSNEGEARVEALKLGMTYYSLQEWRPVADFAGKNPELKREPVTGKGTG
Ga0212123_100008967	F020407	AGGAGG	MVKQRFLTHFKPWLFAVTKVGGLIVAYQLFDAIRTYLQYAPLNSVDVVVAATVALLAIGLLCGLWAWGEWCWFKLRSLRRFCGELKPAFNNRRRPRTVRTSRSAVGTMV
Ga0212123_1000089691	F000281	N/A	MQNPVKERIEKLRDEIAQISEANRLYLKARKKPHGAAGDHERRLQRLQEILDELVALTDWKKL

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0212123_10000896

Overview

Ecosystem & Geography

Associated Families

Sequences