Scaffold Ga0212123_10000804

Overview

Basic Information

• Taxon OID: 3300022557
• Scaffold ID: Ga0212123_10000804
• Source Dataset Name: Paint Pots_combined assembly
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 95508
• Total Scaffold Genes: 88
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 48 (54.55%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic → Iron-Sulfur Acid Spring → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Source Dataset Sampling Location

• Location Name: Canada: Banff, British Columbia
• Coordinates
  • Lat. (^o): 51.1699
  • Long. (^o): -116.1578

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003842	Metagenome / Metatranscriptome	466	Y
F094183	Metagenome / Metatranscriptome	106	N
F095041	Metagenome / Metatranscriptome	105	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0212123_1000080420	F094183	N/A	MNYQELAGKLLHVAERLQKHGNKLEGGVVGKSAVKLATDVEEFDATLDGFLASRKSGELLLETLLRSPAAKKHLSLDLLKKALREACSKRLKAEELVAAKREFVETVHQLDRADAASKFLKHAFAEAAYVAPAGKEKGELQQEFFALGRLSEDEYATTIAKRTFGELRRLAATNGIRFTDKTTKPHLIKMIRRYGRRLAANLPSIAA
Ga0212123_100008044	F003842	AGAAG	MVSTKETRPVAPETQKWSFSADGKPVTLDEFLESYKKQGVFYEGKEQWLKGVVKVSWENFFLICTEELDDISQRAAKMLVHYCLEIVEDVVSRIRGPIDATKIAEAMKREFDEQYDNPIYQFQWAMRHDAIREAVTNAVANRWGK
Ga0212123_1000080480	F095041	GAGG	MRTTGYLILLTVSASNFAFAGDIIVPRLPDLYAFRYTPVSRDPFISADAGKTLVGKGVELDNSFSSKAAQRYLQTLVAAIQNDLFVEGVSTGEGKSHAIALINGVAFSETEKIPVTVPDSDLVQLTELARTYGLPLERDTSEKSTILLEVGPIDSSGVAILLPGFRAPLCKLPYVGDSGTERITLERKKKSEHD