Scaffold Ga0212123_10000349

Overview

Basic Information

• Taxon OID: 3300022557
• Scaffold ID: Ga0212123_10000349
• Source Dataset Name: Paint Pots_combined assembly
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 156339
• Total Scaffold Genes: 147
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 128 (87.07%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Associated Families: 5

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic → Iron-Sulfur Acid Spring → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Source Dataset Sampling Location

• Location Name: Canada: Banff, British Columbia
• Coordinates
  • Lat. (^o): 51.1699
  • Long. (^o): -116.1578

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000969	Metagenome / Metatranscriptome	818	Y
F018797	Metagenome / Metatranscriptome	233	Y
F051804	Metagenome / Metatranscriptome	143	Y
F069867	Metagenome	123	Y
F102903	Metagenome / Metatranscriptome	101	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0212123_1000034917	F051804	GAGG	MAKQVVATTLMIEILGPKDASAKRIRFVEDILRNCIKTLDKDFRKSRIPQMKGFSLRPEKDLRKRRGL
Ga0212123_1000034918	F069867	AGGAG	MSQRIYEYPKVIGKTVAKLTVANESDWHNISVKFTDNTAIHFSIRPFMQFEPEHIDWTTGNGKILRSYPFVRQTEG
Ga0212123_1000034920	F102903	AGGA	MPKPWVELIEARGRTVKRMNVAYDEEYVAVEVEFEDGHSMNVDIIPAVQIRPQFQHVSTGDARIIRNYKSRISVAGGLKIRSR
Ga0212123_1000034951	F018797	AGGAGG	MRIVALSLLVLWTLTLASCQSKAAKVKQLQDQYNAEYPA
Ga0212123_1000034997	F000969	AGAAGG	MVNDDVVKCPLCGGFTHIEQTELREALKNPRLREQVELYIAQLLNSPGEDLTAVGAAQAGRSFQKDVHSWNPCVPMWKRSAKE