Scaffold Ga0212123_10000187

Overview

Basic Information

• Taxon OID: 3300022557
• Scaffold ID: Ga0212123_10000187
• Source Dataset Name: Paint Pots_combined assembly
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 211952
• Total Scaffold Genes: 180
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 135 (75.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic → Iron-Sulfur Acid Spring → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Source Dataset Sampling Location

• Location Name: Canada: Banff, British Columbia
• Coordinates
  • Lat. (^o): 51.1699
  • Long. (^o): -116.1578

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000348	Metagenome / Metatranscriptome	1250	Y
F001343	Metagenome / Metatranscriptome	719	Y
F003445	Metagenome / Metatranscriptome	486	Y
F005581	Metagenome / Metatranscriptome	396	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0212123_10000187136	F003445	AGGAGG	MAFPNDDPTVQRGDRSIQLIDWLVGRLEECLGEVLPLQTDDLLKDYATDARNSVASAIEQLSLARAKKEQQLGGRTS
Ga0212123_10000187148	F001343	AGGAG	MKFATVSKGLVMGLALLLASSAFAATKAKLNLQAPTTVNGTKLKPGDYRLEWDGSGPNVEVSIVQGKNVVAKVPAKIVELKTPALSDTAVVRTNDDGSRTLAGAQFENKKFALDMTDSGMAMDAGSSK
Ga0212123_10000187165	F000348	GGA	LKKALIILTAVVLAPVLVVSLAVFAAGDWRTIGQTETGDTVSVSSVRILKNNQRLALVRVEYKEPTKLPQGGPFVEMRARVRINCASGAVTPTTEWFYSRDHSGRFVVSKKAAHDDEFGKLPEGGFLALVSKDVCSQTK
Ga0212123_100001876	F005581	N/A	MKAPKGAIFEEKYRVVAVDGQSLTIRGVRSGKVLTIVNPDPDTPLTPAEYPPGKLIKLSDPSRSPAN