Scaffold Ga0212123_10000118

Overview

Basic Information

• Taxon OID: 3300022557
• Scaffold ID: Ga0212123_10000118
• Source Dataset Name: Paint Pots_combined assembly
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 265459
• Total Scaffold Genes: 269
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 215 (79.93%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic → Iron-Sulfur Acid Spring → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Source Dataset Sampling Location

• Location Name: Canada: Banff, British Columbia
• Coordinates
  • Lat. (^o): 51.1699
  • Long. (^o): -116.1578

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000409	Metagenome / Metatranscriptome	1171	Y
F009642	Metagenome / Metatranscriptome	315	Y
F035515	Metagenome	172	Y
F063912	Metagenome	129	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0212123_10000118136	F000409	GGA	MMMTNERKIWEAALLLVRRHGAEAVSVAEREAERLRGGDDELTCVVWCWIARSTAELLRPEPEIGERIH
Ga0212123_10000118175	F035515	GGAG	VILGRMVIGAPLLLLGCAGPVAEVTTIPAEEAAWRAVAPRLPGMPAREIEQCAGPPRGVSPAPGGTALLYRSQDLKNYCQVALLVRDGRVLAFTAEHAAPEFLYLRDGSNYCGRIFQQCL
Ga0212123_1000011834	F063912	N/A	MPIESRGMLTKDLLFGMNAISLAGFAVMFIALNLSRQPQLAKFWSILLMGAGTALLLVGLYLRTPAG
Ga0212123_1000011874	F009642	GGGGG	MGNVDTDKTAKVADILFRYMRARHRFKQKVEYPLPAHELAALLHRGKTEFDEIYVEPDASPPIVLDGKADDVFDAIINKRYRAIPFFDPELVAAWRYYVISDGPMPRRPGPRRLSQGRAH