Scaffold Ga0212123_10000100

Overview

Basic Information

• Taxon OID: 3300022557
• Scaffold ID: Ga0212123_10000100
• Source Dataset Name: Paint Pots_combined assembly
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 287770
• Total Scaffold Genes: 271
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 203 (74.91%)
• Novel Protein Genes: 9
• Novel Protein Genes with Ribosome Binding Sites (RBS): 9 (100.00%)
• Associated Families: 9

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic → Iron-Sulfur Acid Spring → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Source Dataset Sampling Location

• Location Name: Canada: Banff, British Columbia
• Coordinates
  • Lat. (^o): 51.1699
  • Long. (^o): -116.1578

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000426	Metagenome / Metatranscriptome	1154	Y
F000978	Metagenome / Metatranscriptome	815	Y
F001102	Metagenome / Metatranscriptome	777	Y
F001128	Metagenome / Metatranscriptome	769	Y
F001431	Metagenome / Metatranscriptome	696	Y
F012080	Metagenome / Metatranscriptome	284	Y
F025102	Metagenome / Metatranscriptome	203	Y
F029863	Metagenome / Metatranscriptome	187	Y
F037387	Metagenome / Metatranscriptome	168	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0212123_10000100138	F029863	GAG	MQASQNKHPFYVAYDMPGMAVGVAGNAEGKLFTVQSQGTGPSAKLTSGDCPSQLRVASSGRITCFAPGDMGSMGAGHAAAPRGMSNPHGAPAPK
Ga0212123_10000100188	F001102	GGAGG	MAPGSRKQVDVARLKADLTAASVELLSAHCAADRVRLQYSLKDIVTFGERHSLQRAIASAEALHRFFSQIQAHIHREEETGL
Ga0212123_10000100194	F000426	AGGGGG	MKDIHEVLRQKQAKYAQLGKQIEALQQAAEKLREVAPLLAENDDEDNVVLAEVDETSSQSEAMAAKAGAGSSGPAASKAARPTAPRWP
Ga0212123_10000100226	F025102	AGGAG	MNKTIEILLTALALAGMYCAIPKGSVPASNRSIGTEQMVLVADGSDPMPLCRGKACK
Ga0212123_10000100228	F001128	AGG	MRSTAKQAAAGAKWPPEEGQIITFRSLNGLTEGIVKEVRWGLVWRDFVLDDGRVIPEHKVVDHPEPPVWRKAEEVTQEEREACEARLVSMAEAGLDPRDQEQPFWAELNQYLAYTYLKYKRAGVKPPGAE
Ga0212123_10000100229	F012080	GGAG	VNQPHEESEEERVWRVLSEAGLIDIPPDEFAERIKEAKHVVIGRLGELLELTTDTQERESAAISLATLRKLERTVSRGGGQSSD
Ga0212123_10000100237	F037387	GGAG	MGISNPDIQKKVFGPRWEHEMEKQGWPFWKKLMHRLQDCPICKPKSPTRKLQ
Ga0212123_1000010049	F001431	AGG	MSTIQDVSAEQLAKVFYHYHAALSPDGSGHGNREESFSWDRASQSERKLMVAAARLALIELATTPVECKQSRKYYAEPGKAEWGS
Ga0212123_1000010090	F000978	GGA	MEGICCLRCRREIEPGRKSVAVYMFAQTVGVKPRQKSGAQRICFCPQCAVSLAMGLPPEGALNMAAWDMIRDLVSSEPSLNEAAWESLRGVIALLGSGESSAPDARARFRRTG