NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0212123_10000099

Scaffold Ga0212123_10000099


Overview

Basic Information
Taxon OID3300022557 Open in IMG/M
Scaffold IDGa0212123_10000099 Open in IMG/M
Source Dataset NamePaint Pots_combined assembly
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)287881
Total Scaffold Genes267 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)224 (83.90%)
Novel Protein Genes12 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)11 (91.67%)
Associated Families12

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic → Iron-Sulfur Acid Spring → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Source Dataset Sampling Location
Location NameCanada: Banff, British Columbia
CoordinatesLat. (o)51.1699Long. (o)-116.1578Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000208Metagenome / Metatranscriptome1593Y
F001010Metagenome / Metatranscriptome807Y
F001511Metagenome / Metatranscriptome680Y
F001742Metagenome / Metatranscriptome643Y
F002004Metagenome / Metatranscriptome605Y
F002288Metagenome / Metatranscriptome574Y
F002560Metagenome / Metatranscriptome548Y
F006318Metagenome / Metatranscriptome376Y
F010282Metagenome / Metatranscriptome306Y
F011054Metagenome / Metatranscriptome296Y
F034671Metagenome / Metatranscriptome174Y
F064394Metagenome / Metatranscriptome128Y

Sequences

Protein IDFamilyRBSSequence
Ga0212123_10000099152F011054GAGGMHTGSTITDLMATVERAEEKARQIAMEQELHAIFAMQIPMAQGDQVFMGAA
Ga0212123_10000099228F034671GGAMVNNEAVNCERVWHEISNYLEGDGDPTLRAAMDEHFRTCQRCSSVLEGTRNVIRLYGDERMMEAPSGFGRRLERRIAQNVRVTRGRWSVWSTWLVPVAALVLIAGGLRVANSLTAGPELKSEHAQPGQGIPPDMMVVVTSDAKVFHVAGCDFIHNKQTERTLTAKEAIREGYVPCLRCMREYLHTAATGHSTLGAEADAHIDTEEGTAHGGGE
Ga0212123_10000099237F010282GGAGMIMSATTRPLYLKILSCMMVVVFPVALFGADQPGAMLYSHGTALVNGNSIAKSSALFSGDLVQTNSDSVANINATGSSVMVLNESLVQYEGTALRLEHGGVTVSTSRLLTTRAGEVVVTPVSNVWTEFEVRDVDGRVQIAARKGNLTISDATGTTTLAEGQQTTRDDAQSQNNRKRRRDVAPGAATSAAGAVFDSPITIGVAGGIVIGGTIWALAHSDDPLSPAVPK
Ga0212123_10000099266F001511AGGAGGMEFVMFEDVDGMEVFVNPETVIWVREYPNQTTVISCGHEDKFAVRLAPAHAVAALGKSVR
Ga0212123_1000009930F002004GGAMRKIPNSSRLDQHISRALNKIKKPSTAEEITELLNRDLESEDRPFQTKDVAEWLRNAGDTALTLYWSRTRPRR
Ga0212123_1000009931F001010AGGLYNTGDMAARVEMQNTGDPRTRREIAALIEHVLSDRPGEWRVSILGSRANDNWEMKVEGPEGFERSYTLVGSAGEHQPATIGSLVLKLLPARKP
Ga0212123_1000009934F002288GGAMGEADGVTKRRMFRWPKQARELVREYKEQISRSQEHNETGRRILVTKLAAISGNPRDACLRFLCELGVHQKRAYREWMKSEQQRLLDLIVTMPVEEAAKVLGRPAGSVRSMLHRLGIGGKTGREWFTKFSLSRALHTRPDEIQKWIDLGWLKSRALSTAGTKANIIHPDDFCEFVKEHGRAVVGRRLTYDALWFVQNYVFPPSHADLLSVRGTYKRHDSDVETDLNAESQSAGDSEEGGGQEG
Ga0212123_1000009954F000208GAGGMRIRVTTRADLFEKRKEQHIERGYRIEDERPIPVNGLCSFIAVSEIADSDGVGDLVAQALNGMAK
Ga0212123_1000009955F002560AGGAGGMVEHNPPPSHDSVRPRVIPLPIALYVSGELIFELYDGGQPSRRFSIRWERFVPTKENEPEAESFQTVLHTRQD
Ga0212123_1000009960F001742GAGGMPDTTSGNRGSKKQKIPRIGPEEAARVFAQCEHLLDSATDFIEGQRQVGFAQFLAPLHDQILELALQPDSWGERTRARLISEVFARLRGIPVEKVSVEEIVQISNVVVPCFLLELGRRKHHSDIEFPNDPCEAGARLSLRAGPSGPVHSISVEQLARLVAEAGEDLVGLCYFGDQRSRENIEALLALKGSTTDS
Ga0212123_1000009971F064394N/AMKHQEQIATVARLRSFHSKNGEEPVGVALRRWIEDPITPKTDNGNLRINPILVFLAVMALLAGGTFLFFSLGEL
Ga0212123_1000009976F006318GAGGMWRQPPIWEPQGTKFRPYSITTLIFFYIGRFFGRLLGRHR

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