NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0212123_10000055

Scaffold Ga0212123_10000055


Overview

Basic Information
Taxon OID3300022557 Open in IMG/M
Scaffold IDGa0212123_10000055 Open in IMG/M
Source Dataset NamePaint Pots_combined assembly
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)356133
Total Scaffold Genes367 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)144 (39.24%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic → Iron-Sulfur Acid Spring → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Source Dataset Sampling Location
Location NameCanada: Banff, British Columbia
CoordinatesLat. (o)51.1699Long. (o)-116.1578Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007433Metagenome351Y
F016315Metagenome / Metatranscriptome248Y
F022253Metagenome215Y
F024386Metagenome / Metatranscriptome206Y
F029184Metagenome189Y

Sequences

Protein IDFamilyRBSSequence
Ga0212123_10000055104F029184GAGGMPKQPAYFDSQASAAAALKIDIDELREAKREGCPAFRSGRVYRDELLSWLEARALQKNGSEKLNGIGLHKGRSVIAQTIRGLGACANLGVLTPEQYFEFCRTIVEAAGDHELREVFRQTILDWLQRNFSEVAEAKARKAHPKMMSWYRSETEAQARRKDEEGDFEAVIRQLNGQ
Ga0212123_10000055106F022253GAGMKTFALGVLLSLVLVAQGFAIIRPPYPVKPMPPYQGRFIVVGDDAKSQTASKSPK
Ga0212123_10000055170F007433AGGAGVKTVSIFLCSSLVALSGCAFTHKMMEQPSGPPEKPTPKLERKTEVFTGTVVLADGAYRLRLLKDPDMVLRLTRARKENEFAKEQINLRKYYEKTISVNGTLYNEWIFGADVVGQWTPPGGDTGPNMSAPKQTRP
Ga0212123_10000055308F024386AGGGGGMKRYFAIFAAAVLASFVCAQNAVGFPGEGILNRTAYFAHKVAYQVDNHVVHPVTHGIARRLR
Ga0212123_1000005578F016315N/AMRKWNNPDDKKAACTAVLKKIMSDRSFGAKCLKSDEFARNAFSTIGEIEVPEDAKVVFLPEGDVDNAKRDGAGSLVIEIPPSNGDRNPNGHMMEYVRCTYTVW
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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