Scaffold Ga0212123_10000048

Overview

Basic Information

• Taxon OID: 3300022557
• Scaffold ID: Ga0212123_10000048
• Source Dataset Name: Paint Pots_combined assembly
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 373020
• Total Scaffold Genes: 377
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 305 (80.90%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 7 (87.50%)
• Associated Families: 8

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic → Iron-Sulfur Acid Spring → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Source Dataset Sampling Location

• Location Name: Canada: Banff, British Columbia
• Coordinates
  • Lat. (^o): 51.1699
  • Long. (^o): -116.1578

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006761	Metagenome / Metatranscriptome	365	Y
F029494	Metagenome / Metatranscriptome	188	N
F029867	Metagenome / Metatranscriptome	187	Y
F034643	Metagenome / Metatranscriptome	174	N
F035375	Metagenome	172	Y
F063936	Metagenome	129	N
F075923	Metagenome	118	N
F075925	Metagenome / Metatranscriptome	118	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0212123_10000048191	F075925	GGAG	MVNEDVQRSAEELRDTAAKLRQLARQTRFARTRRELLSLAERFDMLAAQLEGGNPPPDAA
Ga0212123_10000048192	F029494	GGAG	MTADDNGLRRSVAHTIAFMRMAAIELRRIAERDPDLAGELRRIADQLDADSDDLEQTAGPGTP
Ga0212123_10000048228	F035375	N/A	MVALERELTDRSPTVVAPTTADAIPLALRRRGASARQVLAMTFVGMLALALFASRDLPSWSERLGDGPTGLAAQKMAARWDEAMASLGLTRPHVVLRDLIRSLLDAQW
Ga0212123_10000048308	F063936	GGAGG	MLRFAAIGAVFLIGCGLAAPAGADVPAPGEKVRPGCNCPPVVHRRVHARVRHHRFVPPPVAVARLDYYNVLIPSPYDPAYDRVVVDHFRTPTVTGFDEPWRPKPVWPGILPYRASVPEGIVQYDGLIGHYVPLAQADAAIVAAALPLPPPPRSAWY
Ga0212123_10000048314	F034643	GAGG	MPMAPLNTYQNAVVDRYKSADGTTDYEKAWSYLDRIMGREIGKAGGLLTFNAILIAVAIATGPWWSVICPVVASLVLLLLLGVCRGAPSEMTTARDDLMSASRSVWQGMSLIDISIIISAIGILILGIQRLV
Ga0212123_10000048361	F006761	AGGAGG	MTSIWLRPAGRQEQALQHLIDRMAGEQGTVAFPPHLTVCSIPGDLGVLDAAAAYVKHCGLLPLRIAKAAVTGAVITPFRAVFIEVENSPELQEFRERLREIVGGPPLVPPHISLLYTIDGVTQAPRTDFDSERLKAIAARCAEATPDAHFTLARPVVNSSGSSETDVRGWKAIRAL
Ga0212123_1000004873	F029867	GGAG	MPKVFAGCLAAVVMIAADLAFAAPPSESAEQNVRESEQYERLLCTNAAFRQKRIAQECGPLQGSQFYDSCAATFQCGGAPRGRSNRPPPSETIR
Ga0212123_1000004877	F075923	AGG	MPLRMLFTTTERERLGVVVNNLCFFASQMMLQGSPELSNRAVANLDRVKSDEETLLKRLDEVAREQNDESPLRVIEDLTRPPTDIGQMMTLVRRCLLASAFLGHCLAQPSHPEIASQALHPEKRLH