Scaffold Ga0212123_10000004

Overview

Basic Information

• Taxon OID: 3300022557
• Scaffold ID: Ga0212123_10000004
• Source Dataset Name: Paint Pots_combined assembly
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1052961
• Total Scaffold Genes: 974
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 693 (71.15%)
• Novel Protein Genes: 25
• Novel Protein Genes with Ribosome Binding Sites (RBS): 16 (64.00%)
• Associated Families: 25

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic → Iron-Sulfur Acid Spring → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Source Dataset Sampling Location

• Location Name: Canada: Banff, British Columbia
• Coordinates
  • Lat. (^o): 51.1699
  • Long. (^o): -116.1578

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000132	Metagenome / Metatranscriptome	1972	Y
F000249	Metagenome / Metatranscriptome	1459	Y
F000269	Metagenome / Metatranscriptome	1410	Y
F000508	Metagenome / Metatranscriptome	1069	Y
F000801	Metagenome / Metatranscriptome	886	Y
F001709	Metagenome / Metatranscriptome	648	Y
F002012	Metagenome / Metatranscriptome	604	Y
F002201	Metagenome / Metatranscriptome	584	Y
F002461	Metagenome / Metatranscriptome	557	Y
F003117	Metagenome / Metatranscriptome	506	Y
F003337	Metagenome / Metatranscriptome	493	Y
F003398	Metagenome / Metatranscriptome	489	Y
F006150	Metagenome / Metatranscriptome	380	Y
F006353	Metagenome / Metatranscriptome	375	Y
F008825	Metagenome / Metatranscriptome	327	Y
F009411	Metagenome / Metatranscriptome	318	Y
F010883	Metagenome / Metatranscriptome	298	Y
F011862	Metagenome / Metatranscriptome	286	Y
F017346	Metagenome / Metatranscriptome	241	Y
F017681	Metagenome / Metatranscriptome	239	Y
F019610	Metagenome / Metatranscriptome	228	Y
F019706	Metagenome / Metatranscriptome	228	Y
F024747	Metagenome / Metatranscriptome	204	Y
F054207	Metagenome / Metatranscriptome	140	Y
F055027	Metagenome	139	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0212123_10000004112	F055027	GAGG	MAITFMAVVAGLIFSIAVALLTEELIFGQVCRVFFARPLAPRSAPPKDRQSR
Ga0212123_10000004119	F019706	N/A	MNTPLLAPPLSALDELKLDVLKLNELKKTGEVKKKRVLLVDASNVKRDLRAEVMRKLGIDVDCAADLAEARSWWRADLYDLVLINLEKGRGHRDRFCDDVRGATPPQRLAFLVGKPEYLSASPSADEELLLQDTADQILVSDVKAALSSNVGDLSQRWGILEASRRISAVRSACSARTRAMRDRPVPPRDSEARPFKRIADSTTLDDLLREEMQ
Ga0212123_10000004129	F010883	GGAGG	MTSSAHDEAWELIALGDDLSDAQRTKLRVHLQECEACRGYAEAAGRVVAAVRSLPLAADSRLVRATQMRVRFHAGRLREARERLWFVGLACLGVGLSATLTLPFLWRLCAWVGGWVGVSPLVWQASFVFIFIAPALGVSILLLARGTHLTDNAEQSRPWRQES
Ga0212123_10000004142	F002461	N/A	MQAQEDSGETPLGDVARSLRKKPASSEAVIDNDNLSKVVDDAASRRVAGTSVVFSLDPGGKSFHVSSPDVTCSLSFSAKTTALLADPVVLDELPRSELAKLDGPATIDGDSLQVSMHNGTSWDLREIVIGLTIVRSPQPGESRSQPGQPRIFPAAAGDAAQSTADPYQKQPDMTMLLRVKGSAAPSATATFRTPLNFALFPDQEWHWAIVRAKGIAPQTPAEMPAGQDEQKGMSPSAATTEVSPQNPPSVAPPSNPDAAVAIH
Ga0212123_1000000416	F002012	N/A	MTVSSLYFALFKLIRGGFVYAGAARGTWVASAAHPLRDRPAPVAALVLVQRLSSHKNDIYNVLWAVVFGFATLNILSLAARRFEPNRRGLTFGELMAVLVVLLSIFLLGWEMLGMFHIFPIKLQR
Ga0212123_10000004185	F000269	AGGA	MKSSWSFRDCWLIAGSLLLSVLPAASESPTKPTDVPATVIAHLPLPQAAGNQMLLQKENGKQYLYIQQAGKTGFMIVNVSHPEEPSLLKRTAESNQATSGNLEMVSPDIAIAEAPEKTPNTLSSNAHPTETVRVLDLSDPKNPKTLETFNKVTSLLPDGGHGLIYLTNNDGLWILRYSRPSRLEPAKKKPPCDSSSAIQAMPPDCQ
Ga0212123_10000004213	F003337	N/A	MRVPVIRTFVCWVMMSMSPAALAASDPGSAVLRSNGGVWVNGTEVVASIVIFPGDLVETRPGFVANLDAEGSSVLVQSESVVKFQGNYLDLEHGGVSVGTSTLMSVHIKCMRIEPVAAARTQYDVIDRTGAVHVAARKNDVNIKQSEGLRKPAAGNSSAQSATVHEGEQTTRDETTACGAAERPEGPGHALNTKWIEIGGGAAGGVIALCLILCRGSSPSSVSPSNP
Ga0212123_10000004257	F001709	AGAAG	MPQEISVSYQAIKSKVYRLIDALVVGEKTEVEVQESIRRWWELIHPADRPIAQKYLLIVLERSRSALDAVEAGLAEVTDHEVSRSSDAAKALKLVDRMVKQAAKPSGLGTTA
Ga0212123_10000004258	F000249	GGAGG	MRSLAWILAFSILMAIFCPAQSTPSTANSQPASSQPRMFFPSDMFWGWAQFDLAPPHNEIDPNLCAGNAGQYGGKQAPCSMFARYMLSGMLEVRPFGRSQLRRLMIFGAPSFLFGKNVPQTLYTWSPDAIGIEHSWGAGIFIAKGFEFRVTQHFLFDRLGARDTNLGIADLGNNGPWGRYMTVGVHKSFGTRRW
Ga0212123_10000004300	F008825	GGAG	MDCVELQQSLAEVEDGSSLEQQAHLKMCPACTALVRELSLIVATAGQLQEADEPSPRVWNSIEIELRKEGLIRTPRAEHPFLPSFVARWGPARWLLPAAAMILLTVAIYERHQYESSLTTERASVALPATNLADLNDDDLMQEVEASAPAMKPQYVENLRRVNESIRDAQGLVDESPNDTDARRSLMDAYQQKAMLFEMAMDRSLP
Ga0212123_10000004397	F003117	N/A	MGAMPDRKLQIVRFIGSTPSTAYCDVCKLAFRTRREFLVDAEKARQQLQEDFAKHECKPEEGAVDEALAHIK
Ga0212123_10000004503	F024747	N/A	MPSPSPRRPGERAPRARFWENTPAVLRSPRGFTRGKLQVISLTGGLLTLPKPLDHGTRVKLMFLTPKGSVFGAAEMLPQISWSLQPFKFTRLYDDDEGRLQATIQSSLGQRRRRHDEVERFRAW
Ga0212123_10000004507	F006150	AGAAG	MKSAAGNHAGLRAAAVAGVMLWLMAAPLSFATGDEPTVDELKARIANASIADRPPLCIHVCERQVDMASRFYVAGDSDKAQAALTDVAAFAELARDYAIQSHKHEKQCEIAVRKMVRKLTDLEHAVSHEDEGTVKSTVERLERVRDDLLAAMFSKGNKK
Ga0212123_10000004519	F011862	GGAGG	MMRASLFSAVLVLANVSSAQTLPATQSRPDPGRDSAIRIVEQIRRADYEGDRAALKRLHSELAPPVQDKILISRIDYWRGFALWRRAINGFNETPTPPDLAEDLNGAIVDFKDSLAQDPAFVESKIAEASSLGYLMFMNTKDQARVQQLMQQAGPLLKEAMASDPDNPRLLWVLGPVRWSSPPERGGGQDKAFDLYNRGLEIIRKRPANADPLEPSWGEPELLMNRAWSNLHRTVPDLKAAQKDAEAALLLVPYWHYVRDILIAQIQDAQAKAH
Ga0212123_10000004566	F000801	GGAGG	MADKEWTVKELTEALKKFPLEAKVFYEMGPNGAGTIGKAQYVKARAEDNEFGVLLDR
Ga0212123_10000004568	F017681	N/A	MSNFEHSGRLAKLHYVGVKTKELTPKQTLSVPCTTCGAAVGEACELHTGALRTEPHRDRKLSAAEAVEREAAKP
Ga0212123_10000004689	F003398	GAGG	MTTSNPESALLSEVCAQVKRLGYAATKHVRLYGEDFQVVSDPFPEADGVAVHVTTKKDAKVRVLRLPATVTQSLKPRRRAA
Ga0212123_10000004778	F000132	AGGAG	MWIEKLADGVVQVQTPIGPRYLMPSFLQRVYFLWMFRHFPILPHAVLSRGQQRMIDRLCSQQRFVSMAYADGLEDAPVIGTVERRLAPGTESLPQRRPVAGETSAALPAEARQRG
Ga0212123_10000004810	F009411	AGGAG	LTKLNDEHNKHAGIARLISDLRTAKVELLSAQCATDRLRLQHSLDDIVSFGERQALQAAIASAGALCRFYNSIADQLKQADRQE
Ga0212123_10000004818	F000508	AGGGGG	MMMNKVVVASLQKEYSRLEAELGKIGKALSALGYSGGKKLRTAHVLSKEARARIAEAQRLRWAKVRKAAAKVEK
Ga0212123_10000004836	F054207	N/A	MPKRNLRVLKWMGMTPALAACTLCKREFKVPLESLKSVAGAQKYLQLQFTQHECEKAPDAPVG
Ga0212123_10000004851	F002201	GGA	MWINEVAPERLAELFHHYHEALAPEASGKGSEGRATWKEVSQQERSRLVAAARLALLELQAMAAERPKAHQYFARPGEAEWGC
Ga0212123_10000004913	F006353	GGCGG	MRMRLLAGMILSVAVLPAQSGERPVYAESFRQGSTHVVEEKFEVRLTPQDPIYRERIKDSHGADRYALSIVPQGPEGDTTITSWQVKLADLHHRIYDNVLMASQTPSEEAGNNLWWLDPSNFAGVPISAKRIIKVEDFYVVLQVKARHLTPPDSPYLDSMTVAVELTNKDPRTAQESHSGNP
Ga0212123_10000004949	F017346	N/A	MGIFDSFRKDEVTGSKVLVCQLGTSFDEHLKSDLRVYKRFYPAASSATFTSVAELRGAVSHQYDILHLFCDVDNRGVIADASGDRITGSDLLSSAVASGVKLLWIGNDNPQEAYDAGFQTRGLKINVVLTLRRLGSNTSLFLDNLLGKMSAGEQLSKAWTAAQPAGKSVQPDVPHTVSSLGRGSVVLK
Ga0212123_10000004951	F019610	GAGG	MRAYLSRLTPKTFILLALPLLAIAYSVVTMVVPAVVHAVVPDVVRSVLSLI