Scaffold Ga0212123_10000003

Overview

Basic Information

• Taxon OID: 3300022557
• Scaffold ID: Ga0212123_10000003
• Source Dataset Name: Paint Pots_combined assembly
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1610730
• Total Scaffold Genes: 1468
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1116 (76.02%)
• Novel Protein Genes: 29
• Novel Protein Genes with Ribosome Binding Sites (RBS): 24 (82.76%)
• Associated Families: 29

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic → Iron-Sulfur Acid Spring → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Source Dataset Sampling Location

• Location Name: Canada: Banff, British Columbia
• Coordinates
  • Lat. (^o): 51.1699
  • Long. (^o): -116.1578

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000228	Metagenome / Metatranscriptome	1519	Y
F000359	Metagenome / Metatranscriptome	1236	Y
F000515	Metagenome / Metatranscriptome	1062	Y
F000522	Metagenome / Metatranscriptome	1055	Y
F000687	Metagenome / Metatranscriptome	937	Y
F000954	Metagenome / Metatranscriptome	822	Y
F001265	Metagenome / Metatranscriptome	735	Y
F001511	Metagenome / Metatranscriptome	680	Y
F001517	Metagenome / Metatranscriptome	679	Y
F001589	Metagenome / Metatranscriptome	667	Y
F001701	Metagenome / Metatranscriptome	649	Y
F001818	Metagenome / Metatranscriptome	630	Y
F001885	Metagenome / Metatranscriptome	622	Y
F001893	Metagenome / Metatranscriptome	621	Y
F004078	Metagenome / Metatranscriptome	454	Y
F005244	Metagenome / Metatranscriptome	407	Y
F005890	Metagenome / Metatranscriptome	387	Y
F006766	Metagenome / Metatranscriptome	365	Y
F008368	Metagenome / Metatranscriptome	334	Y
F011166	Metagenome / Metatranscriptome	294	Y
F011313	Metagenome / Metatranscriptome	292	Y
F011955	Metagenome / Metatranscriptome	285	Y
F013787	Metagenome / Metatranscriptome	268	Y
F022474	Metagenome / Metatranscriptome	214	Y
F023389	Metagenome / Metatranscriptome	210	Y
F026629	Metagenome	197	Y
F043510	Metagenome / Metatranscriptome	156	Y
F073828	Metagenome / Metatranscriptome	120	Y
F078993	Metagenome / Metatranscriptome	116	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0212123_100000031003	F000515	N/A	MTHFPQPHSSRRAARVQLGDSVLAAIRLENGRHAKAKLQSISTTGGLLQLPRSLAQGDLVELDFEMKSGPVHGMVEILSPVRKTNEGVLQPFRFVALEDDDDRRLRTSLDSAANSVVDRSWLDFKSKAFSIT
Ga0212123_10000003111	F073828	GGA	MNSRRHIRFMPVLAALVLISIACQKKKAPQEELLPMDRVAISPVGESQTILHKTFSVATSVNYPFEIPAHAAMPHLQGSYKSFVKEVGVQSGDETANVDFLILNEDQYNDFSHGKPGEAVFSADASHDQDVNFSLPSTQDQPRKYYLIFRNSPGGVKRKLVQADFTVAF
Ga0212123_100000031173	F004078	GGAGG	MEARKLDFGYLLRYEHLLDENEEIQEVRCIFIELPGKVMVETPFSLHTRCATCGESASHEVPWRAELWADIHEFEHSRHYVRLFEHARGKGLKEVSGWRG
Ga0212123_100000031291	F005244	GAGG	MSVFDEKYRVVEVEDDRLLVRGVNSGHVLTIFSPETPLRREEYPVGKLIALSDPLSVPGN
Ga0212123_100000031370	F000228	AGG	MPMRMFLVPCSCGSTFAVSQDYDRHDTSLTRYLVCPNCGKRHDPKNRLLQLGYQREGYWKVDAC
Ga0212123_100000031463	F005890	GAGG	MSFHATNPASFSYLSSCAVGSANKSLSTRNYGGELRPSYGGTCPSNRTAIAVNFRSQCADDNLALERVCCYVSRLFLGHSFGAFPAPGGARSSASHLAPLRGLGSSQNKFENHGNERLPNFFRAPPRKQTFGTWEPGPLAKLRPV
Ga0212123_10000003209	F011166	GAG	MKVSKLVWQWAKNIHRQAALDSLRNVLAIVGGATILADFGTVKAWLLLPMAAVAFLIWRIDYERHFHGQNVEEAKPGQ
Ga0212123_10000003229	F000954	N/A	MKRGLLIFAAVVLAPVLLVSIVALAANEWRQIGSTAGGDQVLVSAISAPRHGLRTAWIRVEYKEPTRLPQGGPFVELRARVRFNCADSGAAPGLVANSEWFYSRDHSGKLVVSKKTRRDDQFGQSVEGDFAGIAKDFVCKQK
Ga0212123_1000000325	F008368	N/A	MNKADSDRIQELCSLIAVEQDRGRFLSLVEELNRILEDKNKRLPNGPSERKPG
Ga0212123_10000003262	F001885	AGAAG	MPQEFLSLAIWEPLPGMEDASLATMGELSGLISKKGYGRDLLYRGRESHYVLLRYWNSEDARQIALEDPELLRCWARLGNEIRTLEVYEKLEAFSEEKKT
Ga0212123_10000003297	F000359	GGGGG	MSGQVILYFDDQADALRFALAAGSVMAGDGARMTNDLVQETARVSRIRLDAANAGKIRKPAAGHVA
Ga0212123_10000003421	F001265	AGGAG	MAYAKSMGNDNQMDDLHTRMVRVTEDLRVIQRELNCAAMQAPSDPELMEALSALPETEAIQVLCKALDQMRHFLWFYSQVMSNDPELGDRLRQTGSKGEDGKVDTSFLDQLTRSDEAVLLRYLAEAKDRKPN
Ga0212123_10000003441	F001818	GGAG	MSLLHRRRKTDQMPGEGGPEDLERYRRAWHSYVARRNLVVVLFISFVFLGLMIGKLKLGEPADFAILIVWIGVYLLGAWWLTEWRCPRCGKVFGHRLWTARCISCDLSKDDVAAAARGK
Ga0212123_10000003513	F011313	GGAGG	VSKTAAVVLAFLCITLFPTASKAQLLPSGNVYGGVAYADSVDIINRLTFKGWNASLEDLPLHRFSYLGIVLDGSGVYRRGVQQYNLVLGPRVSKNYGKWRIFADAMGGIQQLTSSGQTFHAVAIDGGAGVDRKLPFKNFSWRFQFDYVHTHMLSAKQNEYRGSTGIVWRF
Ga0212123_10000003531	F000522	GAGG	MDHHEAVRKFEHLMLKEADHAREVATELEALAPALTTENARQLAQVQIKASHKQAKEFRELAEKVKEK
Ga0212123_10000003542	F001701	GAGG	MNSIKFLYAAYIATWVIHGFYIGSLVRRYNRLRQQMNMRK
Ga0212123_10000003634	F001517	GGA	MKNFSADKSWILSTLEPDQLVKAKKHRIPRRNLKGGELAVLWSLRVYLVFMMIVVAYQFWTAAR
Ga0212123_1000000368	F001511	AGGAGG	MEFVMFEDVDGLEVFVNPERVIWVREYPNQITVISCGHEDKFAVRLAPAHAVAALGKKVR
Ga0212123_10000003680	F023389	GAGG	MKSFLSKSIRTAMFLLVSAGTCHLLAQDTGGQPSVLHIQQSVTTSKPGFPEFLYTYQVLGGAQSSGEALGLTGTISLKNYTPTFSEVLWLLAYWKGKCPVNDQRLIGANFIWSDILKNPSLSDSELQVDLRFPHPLPMTGCLGLVFAGGPLLEGGATMSADLDLTYQASDPVANTVLDLSGEYCFGQDWGCQNATTDDAMAFGVPIMMLTAGHLVELFGDISDSTFDGTKYYGPLPTGKLWGAINEFYLLPGGCGQFGQNLNGQGFPNPQLLSTLYSWLPGDAVHLESVPLEYKILQGERAKAALQSRVERIFPAPLTVNAGDCVVVIYGRTGNGATDNETQVHAVLAP
Ga0212123_10000003695	F001893	N/A	MTTAKALGGFLAILFVVVACFQVAPPLMANYSFQDDLRTVALMDSGNLQKSEDDVRNDVMRKVKEHDLPIEPKQITVQRINTPGLSAIYVAADYNVTVSLPGYSFDMHFNPSSGNK
Ga0212123_10000003789	F006766	GAGG	MYTGTFINDLAAMVERAEQRARYKRIVDEMELQRMFALQVPQLSEERVFAGAA
Ga0212123_10000003814	F022474	AGGAGG	VKTTLFAAALVVALSLSAAAAQKPPVSKHTAGNPNYDGGTAIQVPPSLCDPCLFYGGDLSPSDPNAAGLSDENSLFIPGSSTYGNFNVPSGMSVTVTGILFNVQADINFDPLTGSYDIRQGVSEGNGGTDVATGTGNIQVAATGRSFIGLQEYSIAVQLATPLTLTAGSYWFNLTPNCTNGATDGSCYDGRSFVSNVTGRTNSIHGAGESNHEMFLNSSFFGFTWANWCDSSLGLNGQQCNGLSFGVMGTQNFN
Ga0212123_10000003859	F026629	GAG	MKTLLLHHEDEPAKGPWATQEWDRIVDAGLGGKSTYDDWSRHFRCPVTTLGSFWRGFDDFRQVRELLGLGCGRLIDEFALDWWEIMSILLHGEIETLIRVQRFAGTIGPGDEVCVSRPGLHADLLRPLLGQRLKVFAMQHRSRKGLQHYLRISTKLSLPQMIDVFWDKYDSGYQLRGQLQRKRRPRKRGSSMRPVVLVPTAYVNVSRTGVAYANTFPGEDFLLVTTRRSGWLNNLPKNMEAARLSSYASVLDRSHENANLEVRFRALLKELCAAPELEILNRLGYFDSFPRRFRHGIEVRDAWRNVLDSEPVQAVLCADDSNPYTRIPLLLARSRGLPNIACHHGALDGRYVFKRTYGDIIWAKGNMELDYLVRKCGVPSEQVEICAPVLPAKAKAASNWNRNDFRPYLVFFSEVYEVSGGRLAGIYRDVLPPLADLALATGRRLLVKLHPAESQQERTRMLARVLSADQMSAVDVVSSPLTDNLLAKTWCGVTILSTVAMECAVRGIPCFLCKWLEGWPFEYVEQFIRYGVGIGLGNSGDIANIPQLLPLSPMRAGVNDNFWQSAPGRLRELLTTPRKECTAAAS
Ga0212123_10000003866	F043510	AGGCGG	MSELREIRLPAELCAAAENKFGGNFGSLEELVTFLLQNLIQADTVDLGRADQAIVEQRLKDLGYI
Ga0212123_10000003878	F011955	GAGG	VSSPQLIPRQRTPRADLTPILENDLGEVAGFIAQQSGRSREVVENHLRWFLLENPVREAQHPLGIGLRSADRLTGCILYSPQEFSVQEKKILLMGSSSFYVDEAHRGQGGRIFLQYSRLARQWPLFGTSANAEAASLWKAAGATPIPYSEGELFGVLRWPPLVEEFAHRKNADPAVARLAGSPAANLAGLFLRLKLDCETSDSLQQLTSAEQVNDLFPIHDSSPKLTAVRDLPYVRWRYFSGRDATVAVFAFPSRQPDQKILITVNQRPRGYRGQINTLNLLDVYPEASAQQWMLIVGALIARYRKVVDAIVLRSQHPDIRKAFCARGFQWRMFDSPNGWFLDRNRLLPTQEWYPVPADGDGLI
Ga0212123_1000000390	F000687	GGAGG	MQTQEIAGGTKLNNGNGHVEEVVRQAHEELRQLLQQRAEVMRRIGTIKQTIAGLANLFGDAVLNDELLELVDRKSSGRQPGFTKACRMVLMDANRALSARDVCDRIQQKAPPVLARHKDPMASVTTVLNRLVAYGEARAVSLDSGRRAWEWVADSEAGSASMRAQA
Ga0212123_10000003924	F001589	N/A	MRKPLIFALCVIPLLLSSCSPRDFLTRRLAADLIAASDTFRAPQEFQLRTGIVANADYLSADYLAFQHHGWISGTKAPCPPNLAPPPCYDVILTPAGVDTFQGLIAPGDAEKQSFTIPAARRELIAISGISKQGNLADVEFTWRWIPLNEVGAVLYPNDFHYRSTVAFRDYDDGWRIVQSASRSGQPLDEALKNAEPSQ
Ga0212123_10000003969	F013787	GGAGG	MSAVSDGEFLRLLKKDIDYFERAVDRFENLIPLVCAPVQDQWRLQAQARRNFALELEILLEKAEECVNASAG
Ga0212123_10000003999	F078993	GAG	VELSGGTADQKAFQQSSTAELTSATEENLKKMTVRTLDAGQKEMVSQIKLFLDQSKAAVAAGDLERGRNLAMKARLLSDELVKPE