Scaffold Ga0212123_10000002

Overview

Basic Information

• Taxon OID: 3300022557
• Scaffold ID: Ga0212123_10000002
• Source Dataset Name: Paint Pots_combined assembly
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2195071
• Total Scaffold Genes: 1923
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1444 (75.09%)
• Novel Protein Genes: 42
• Novel Protein Genes with Ribosome Binding Sites (RBS): 38 (90.48%)
• Associated Families: 42

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic → Iron-Sulfur Acid Spring → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Source Dataset Sampling Location

• Location Name: Canada: Banff, British Columbia
• Coordinates
  • Lat. (^o): 51.1699
  • Long. (^o): -116.1578

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000042	Metagenome / Metatranscriptome	3762	Y
F000078	Metagenome / Metatranscriptome	2550	Y
F000136	Metagenome / Metatranscriptome	1961	Y
F000214	Metagenome / Metatranscriptome	1570	Y
F000279	Metagenome / Metatranscriptome	1383	Y
F000309	Metagenome / Metatranscriptome	1327	Y
F000378	Metagenome / Metatranscriptome	1211	Y
F000414	Metagenome / Metatranscriptome	1169	Y
F000901	Metagenome / Metatranscriptome	844	Y
F001348	Metagenome / Metatranscriptome	717	Y
F001829	Metagenome / Metatranscriptome	629	Y
F001867	Metagenome / Metatranscriptome	624	Y
F002075	Metagenome / Metatranscriptome	596	Y
F002165	Metagenome / Metatranscriptome	588	Y
F002248	Metagenome / Metatranscriptome	578	Y
F002346	Metagenome / Metatranscriptome	568	Y
F002363	Metagenome / Metatranscriptome	567	Y
F003084	Metagenome / Metatranscriptome	508	Y
F003215	Metagenome / Metatranscriptome	500	Y
F004157	Metagenome / Metatranscriptome	450	Y
F005153	Metagenome / Metatranscriptome	410	Y
F005311	Metagenome / Metatranscriptome	405	Y
F005402	Metagenome / Metatranscriptome	402	Y
F005640	Metagenome / Metatranscriptome	394	Y
F005823	Metagenome / Metatranscriptome	389	Y
F005887	Metagenome / Metatranscriptome	387	Y
F006274	Metagenome / Metatranscriptome	377	Y
F006802	Metagenome / Metatranscriptome	364	Y
F008092	Metagenome / Metatranscriptome	339	Y
F008630	Metagenome / Metatranscriptome	330	Y
F009346	Metagenome / Metatranscriptome	319	Y
F012132	Metagenome / Metatranscriptome	283	Y
F014165	Metagenome / Metatranscriptome	265	Y
F016697	Metagenome	245	Y
F017614	Metagenome / Metatranscriptome	239	Y
F018412	Metagenome / Metatranscriptome	235	Y
F023438	Metagenome / Metatranscriptome	210	Y
F032558	Metagenome / Metatranscriptome	179	Y
F032939	Metagenome / Metatranscriptome	178	Y
F033530	Metagenome / Metatranscriptome	177	Y
F080971	Metagenome / Metatranscriptome	114	Y
F102681	Metagenome / Metatranscriptome	101	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0212123_100000021047	F032939	AGGAG	MTTEIRDASLVARIRKQLQATGSSSVKEVLLRLLETTE
Ga0212123_100000021092	F018412	AGGAG	MSSGINPEAQQPTTTQAFEQSDRNPSVMDWGGDGGQIAAPGPSESRVTQAGAPVSPNAGLQNYDFGDSADSVEDEAEREG
Ga0212123_100000021104	F005311	GGAGG	MGSGSGICGAALVRAANAMLTALGGDQVSLLLPATATAGDAAGQLGLVDPGVQEVIISPVVARNLPTGNAGPRRRIEVTLLASVIENQLPTLGLASAEDLFNAALGLSYDGDLFHIEAAVPENFAGTAYFYVVTAVE
Ga0212123_100000021108	F005887	AGAAGG	MGINDRAIDMDFQREVLGKLIRLETKMDSLVGNGQPGRMKCVEDKVALLERNDLRNSVLNRVVTAVISAAVSGAIALHKYWLK
Ga0212123_100000021109	F008092	AGGAG	MSTVPSTTIITNLKNLAAPTSNTTADATGYGLDMPGMLSLALTKAYELKLCLTAITSKTDGADPNLATLNDVLASLT
Ga0212123_100000021130	F002346	GGA	MRLLDRICAGVVFILAIVDSWLVPRTYTGRIWILGTCLALLFTSMLNLLRIRNGYRMPGLKLFCITANVAMFVFAVATMASIGRSRTLANPQVPCIGLLLLAETAFSLRRNP
Ga0212123_100000021133	F001867	GAGG	VPINSPDHVWFQKFLEFHCDDCGGEVGFRSRRRTFSERYLLPIFLLQPVRCAECFRRDYRLMFMPVKERVPEAMKKVATPVPRADRNVA
Ga0212123_100000021215	F003215	N/A	MRGTIKTLRAVQWTMLGSIFLYAVVGEVVGSGARTGDPSLNYIFTTAGVAIVGAIFVVRRTLVLRSAESLASHPDDSLTLNHWKSGYIATYALCEALALFGLVLRFMGCSFEQSLPFYIGGFVLLFFFGPREPVSS
Ga0212123_10000002128	F006802	GGTGG	VISLFMPLMLCITVVVSVGIGVLAAYVAVISILQACATVSQPRLVEARPRLVLVPTQNHVSGD
Ga0212123_10000002131	F000078	AGGAG	LQSVRCLRCNREIEPGHKSVALYMFAQTVGIKPRQKSAAHRISFCPQCSVSLAMGPPPEGALNTAAWDMIRDLVGSDPALNQAAWETLSGVLGLLPATGTEGAPATTDPAGYFEF
Ga0212123_100000021380	F002248	AGGAG	MDRRRESRVFVDLPVQIWGMDAHSRPFTQPASLRTISGRGATLQCVDAQLKPGDIVDVLYQGTKAQFRIVWCGKPGTTLAGEVGVENLTAGTKFWDVDPLRCAASVGQG
Ga0212123_100000021407	F102681	GGAGG	MYKYAVLVAVAAMVAMGLPSRPASTAGSWRVDVRHSDAQLITDATTDYGKTKLDVTLGFARVNGRVELDNDNLARSSFDLRIYPAGSMTPDIDEDGKFLSEWIANLSNHTLVCFHSKGAVRTPDGRIQTTGKLILTRVDRNVDATPSEAYAGPVYGPPMIHRASHEVTFVFDFPAADGKGQKDGVIAASGSTRMFREDYPQLLRAVVSTYWPPVVQDKSCPTPASAGEDYHGSQCTGTLLMAPSLPEAPYAGNAEDYPGPANFNALVGNHLNILVHLRLLARSSGQTPAGGD
Ga0212123_100000021557	F014165	AGGA	MAVAKLKRPKENRLEELAERIAAEINERADKMTPENRARADAETKKIADRVRRRTLRG
Ga0212123_100000021577	F016697	AGGAG	MKRMNVHCTRTAVAYTLLCAFCLGLSLQCVAQSPGQPQTSRPVGAGSTLVHSKFGGQIFGFDIDQNGTEGVLSEDKLLNNGNVLAAVETFDQATGKILKVVGETETQDNFVTMGVVGTSVGLVEREHVTGLYVTKRIYEELNPLSGNKFTSTWKAPLNADQIIVGISRTQSTPTTAVLFFDNNNTFSTIVFGSDVAANTFGPQVTLTDSTFQFADTPQVGYDSVTNQAVVAASDGTVGGPAPQIALVDLTTGVVTQFTGILGPPPFHQGFINGLAVDSEDGIAVTTTELDFRVEFYNLSTQTGFAVVLPGANGQLQSGSDVEYDPVNKLFFVAQSFSSTGAGSSIQVYDINGNLVESLNGFNFSNAFNVIGTHIALNPRHRTGYVDGPDSGVTELQSFTY
Ga0212123_100000021635	F032558	GAG	MQKKPAARAISGVQCLRCKHEIDSYVFTKLNFLPYGSQGGNVMLECPKCGHLEFLSQNSPLLQRLKANPVAVGDGD
Ga0212123_100000021660	F000279	GAG	MTQKPENADIEEFMLPENLLPLGSVLGEGVTPLDVSMVLAKVFHVQYAEVALLRLEAGLLKFIFPEHLRTTGAIPISSKAIAAHTALSKKAEIFNNFARVKHASIFETIKPLGVETDDAPPTVAPIQKLMSVPILNRHSEVMGVIQISRKGLDPRLTQDFSREDLHDLELAAGVLAASPVMRSS
Ga0212123_10000002180	F017614	GGAG	MYLQPVVRCKNPDCPTPSAARIRLPYPNPPRSGETPPEWPKDGWQLRLICRDCDHWYVYEKGDVQWAPYTSPLADHSGLDFVCADLECAEPGCKSRTRWCVLDNSQMSESEMLEFVLRADPVVVCENGHAFGISGTASSSVSKPASV
Ga0212123_100000021826	F003084	GGAGG	MSGKTAILAVVAVTLSMLGSSAAAQDEPNELTGMIGRIFISDQGIHGANAPLVNPFIRSGPGLSFEINYSRRLMGGDVFAISGEIPAVFNLDEDLNSGGDVVPTDYTQIFVTPAFRLNLFPATAVSPWVSIGGGIAHFSEGNTLIYGGKNPGGSTTSGVLQGGLGLDLNPFQHRFSHFGFRGEVRDFWSGEPDFPLAPTGKTRQHNYFVGGGVIWHF
Ga0212123_100000021830	F005823	AGGA	MIRNPAQPPISPSVTIHVSGVLSKGHISYLDQLVASAVECGLWPLINVAKLQELDRVALAYLMGGEGRHFGIVSCPNFIREWMQVEKQRRAA
Ga0212123_100000021917	F005640	GGAGG	MSPTEHHETEKALEELTKWGKNPNIDGGENINFSTSRQGAPSDAFLAFGDCTNFTPGGKRGTLNGAKVGNTGAPLAFFDNFGGTVAVLQQLPCTFSFDLNNGKVTLSGAFPNLPGTLSFHVAYLKTFDGAGGKNIMFYSEKTSDNAGYIIAMQLVGAS
Ga0212123_10000002265	F009346	GAGG	MSMSFEEALALASRDEGFKATVYAMNTLLIHKGIYTQQEFQDLFVEWVEKEQRRKAPAVRTAETSSAFSA
Ga0212123_10000002271	F000414	AGGAG	MSAPSRRPEIRRRRTRHHKVASLRKRLASAQNDADRSRLTAKLHKLSVASPGQPLVK
Ga0212123_10000002284	F006274	N/A	MAAAYNMLMVDSGRQHDTSHKHQRHAIYATETSGLLLVAFLLLVLTLIRYWHTIHWSWR
Ga0212123_10000002314	F033530	GAG	MKTLKVSLIASLIGTAVGLGAWLFGFGRILWPAHPQLASFLLTLVTTVVIQIAWPRLTQPNSQ
Ga0212123_10000002392	F001348	GGA	VNQSQNVLGTVAIQLMNGDEVEIDGAKIRAKRVGSGRLRMVQFQANGRTLEAIEQNPEKPSRWGQLAREKHQVVQFRDVETGRYVAVSVDGKVTEYGT
Ga0212123_10000002488	F002075	GAGG	MSNHNPPAALLPRWRELYTAALFETDCKVIPNRIADAEKAIVVRARELFAAGGDSIEEDQALDDALYALRALQNCLDFRAAA
Ga0212123_10000002581	F023438	N/A	VRFDNVEVILKKPTLKQILSVRCPICRAKPKEQCTMTTGHPSSKTHLARGLEAAKVSRPDNFGQAALRMLKAITGRSLRVLFQHK
Ga0212123_10000002583	F001829	AGGAG	MKKQYLHLSAYPCEVCAGPVVAGSLGVRENEISKETDIRLVGAICLSCGHRQGSAIAPARARHLPPMEWAAVDAVKASHLATAFVEALHRAELH
Ga0212123_10000002586	F000309	GAG	MNPKENPNLDQILQCAVIVSWADLMHEAPSGLIHIEYAFAPAGTLDYLKVWSSLTRGHWLLACEYWMSESPFHGVGVRFDNGYESEGLSNILQRVMQHQASLVLPANLGRQGLLQISTPTEEERSAAAQRIHDTFDRLDIALIEPALA
Ga0212123_10000002587	F000042	AGGAG	MPNIKFVVRVSHRGTRAPAYVQRIDRMPVQMTINRKLALMMGKLTALDAVKAIQTAQCIPELVSVRVNG
Ga0212123_10000002594	F005402	GGGGG	MKLKLDRIISIATLLASLAAIVLVLNKPAPVAQPQTPAAIAANAQSFDHKIGQLQQAAQPASPVSSSYQVSPTPDQPAQSSAQRKTEIHINSDEIGAVLAQAAGAAGTGDLSPDSNIGSGAPTIKDQHVSFEGDVVHGQFLTEIAGKDVWITVSGHLASKDGYATFEPTEFKVGDLNVPVSLVNPALQKKLLEQRDRMKLPDYVGDVKVQNGELIMQQK
Ga0212123_10000002630	F000136	GAGG	MAKSAKLKILYGEGDAEEQGAAAAAFEKAGHNVEKAVGRKAVQAALDKGGFDLLVLGPTLSRNDRHHLPYMAKKAHAEISVLVMHADGSRHPYVDACTDTGASIENVVARIDGMAIAGMMPAAAGAAAGR
Ga0212123_10000002638	F012132	AGG	MFRSPRQCLNRALGLITLAALAMSPLSAAAQEKISGAGPGGVCSNLGQYIFVGGTGGFDALSHPALFEDLLPSGHVGLYEHGTAVAAAEGTTDAIREIEDAFAGTGGGQAELGQVGWNYFTLPPSYGYYKDVYLGHGLRPAEANIDTPQDWAPRDFLKKAVEVWRLYVNAGRTAGIETVAPIAGPNSASEPKLGDNVFATNAFYALERDEALYGKAIAFDVPPNFFLTGGSGPGYQKFIVQAIQWGNEHGLRTTVLLSPYPWPTNAQGQPVYFRQFTGNTFGSDTEKFVKILTAANAVPSEWAVDNYEDPYPEDAPAMVPETVANTTTAVALWLAQNAPVYVRGENGGVMCFPPAGTVQVTTPAGMLSGDGEPPKTLVR
Ga0212123_10000002727	F000901	GGAG	MALNGAAAYGIYPQDIALTDIVRNLNQAGFENEDICMMLSPGHPIASIVRDASLFNSEKEATAVTAGLIGWLSEFGAVLIPTVGFFIRSQAFFHALMVAREAPAMCGNARTLVGLGFSKEEAERFEDELEHLGVLVYISCVENAKTLWAKEVLRHTGALETATLEESRLTVAATA
Ga0212123_10000002732	F008630	GGAG	MAYRISGNRIEAPLSPSPEALRHAFESAVCEIHRADCAAAKKMQYRAPIVPRAKILGLSKDGAEKRALSDAARALAQLWKV
Ga0212123_10000002766	F005153	GGAG	MQLFHVRYRNAQGALMRILNAVSRRGLDLTSVHAEYDGQQHSVTILLDVNHKQTGQLFREWYSIVDVIHVHSGAALREQEAPAWAAHAPASVGLAARAALA
Ga0212123_10000002896	F002363	N/A	MNLELCAIVQLCLAFGVAGLFWPEKLMPLFNVLLFPWAASYRAVRANCWAAVGLAVLLLARLIVGIR
Ga0212123_10000002920	F000378	GGAGG	MEDQASVSSNSTQSVSQRLVRSSRREGRGAWVLTAYGVSGLALFGLLAYFFSDFIAH
Ga0212123_10000002954	F080971	GGA	MRLPNRRELRGKLHQLSTTGGLLQVEKPLDEKLKIELVFQLGETTVHEKAEMLFPMWATQGWLQPFRFIDLPEASRSRLETSLLLFVRGLQGPAS
Ga0212123_10000002961	F000214	AGG	MKNVYEVLRQKEMELTRLEKEVEALRLVAPLLSEEKEMNSEMAKTSLPTAVNGPQQPIRIPAPPVVATAAQPVRAAGWDDTAKRWP
Ga0212123_10000002965	F002165	GGCGG	MPERTDENVEQILARQQFDLDRLKNALALLGVHECSSCLKFFRRTDPGAMFDAGELICYGCIREWWPQRSAHLAPKEREDMEGRLVFWLRDYHHAELFKDPAKLPEESQQELNILANCLECHGTGKLMGGEDCRYCEGRGTVWVIVARKKG
Ga0212123_10000002970	F004157	AGGA	MTHLMNCRLRWWLTASLAIGLVIPAVGQAGGENPYPAQKSKAVSGQGAAENGGGAVIEPAELPATYPRGPYHVSLHVRGNYVPVLRWRIEKGALPPGIKLDDGGTLQGEAQRAGEFQFVVGARDGGNPQQVVQREFTIKVVEAITVVWKVPAHVNVNRIEGSVEVSNATPEDMDLTFDVKAVAENGRATEIGYQHFPLKKGSIGMVLPFGETLPNGSYIVYANVNAEVAKRNAIYKQQLQTPGPLQVVVGP