Scaffold Ga0212121_10271784

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0212121_10271784

Scaffold Ga0212121_10271784

Overview

Basic Information
Taxon OID	3300022556 Open in IMG/M
Scaffold ID	Ga0212121_10271784 Open in IMG/M
Source Dataset Name	Kivu_combined assembly
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1158
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (66.67%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Anoxic Lake Water → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Source Dataset Sampling Location
Location Name	Rwanda: Lake Kivu
Coordinates	Lat. (^o)	-2.0288	Long. (^o)	29.1756	Alt. (m)		Depth (m)	325
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F079543	Metagenome	115	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0212121_102717843	F079543	GGAGG	VAGELARELSQFPFTKLMPHSFRVEIAGLTARELEKRPVKVWVEVDDIGKVVKIAGFARVLRSYPHLNFVYLETYASHLASLVRSDLVRSVWNDEPVRADGCIVVTGPYPSASAMAHGLH

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