Basic Information | |
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Taxon OID | 3300022556 Open in IMG/M |
Scaffold ID | Ga0212121_10080534 Open in IMG/M |
Source Dataset Name | Kivu_combined assembly |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 2544 |
Total Scaffold Genes | 5 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 4 (80.00%) |
Novel Protein Genes | 2 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (100.00%) |
Associated Families | 2 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Dojkabacteria → Candidatus Dojkabacteria bacterium | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lake → Unclassified → Anoxic Lake Water → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii) |
Source Dataset Sampling Location | ||||||||
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Location Name | Rwanda: Lake Kivu | |||||||
Coordinates | Lat. (o) | -2.0288 | Long. (o) | 29.1756 | Alt. (m) | Depth (m) | 325 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F029768 | Metagenome / Metatranscriptome | 187 | N |
F073597 | Metagenome / Metatranscriptome | 120 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0212121_100805341 | F029768 | AGGAGG | MLESVVMEQETGTEKLNALYSEQELTKESQVSVRMEKGLYEALEAQTRAWNMKSVSQTVRAILTFYFLPVAYEIELKSRKVEEFKDFIKERQKEGYSLEEARQNYFLFQTVEYLRFLEQAKIMSKHSLLFMEKATERMNAILKEAGDKINQAIKELDREQEK |
Ga0212121_100805344 | F073597 | GGAG | METGCFVLLGNQFIAGGNKFVMKRRKKQTSEKPELFLIQLEPFKYISSLFPAGEEGLYTFDFEKKLYVLKREESKVVITEEE |
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