NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0212121_10080534

Scaffold Ga0212121_10080534


Overview

Basic Information
Taxon OID3300022556 Open in IMG/M
Scaffold IDGa0212121_10080534 Open in IMG/M
Source Dataset NameKivu_combined assembly
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2544
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Dojkabacteria → Candidatus Dojkabacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Anoxic Lake Water → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Source Dataset Sampling Location
Location NameRwanda: Lake Kivu
CoordinatesLat. (o)-2.0288Long. (o)29.1756Alt. (m)Depth (m)325
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F029768Metagenome / Metatranscriptome187N
F073597Metagenome / Metatranscriptome120Y

Sequences

Protein IDFamilyRBSSequence
Ga0212121_100805341F029768AGGAGGMLESVVMEQETGTEKLNALYSEQELTKESQVSVRMEKGLYEALEAQTRAWNMKSVSQTVRAILTFYFLPVAYEIELKSRKVEEFKDFIKERQKEGYSLEEARQNYFLFQTVEYLRFLEQAKIMSKHSLLFMEKATERMNAILKEAGDKINQAIKELDREQEK
Ga0212121_100805344F073597GGAGMETGCFVLLGNQFIAGGNKFVMKRRKKQTSEKPELFLIQLEPFKYISSLFPAGEEGLYTFDFEKKLYVLKREESKVVITEEE

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