NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0212088_10736027

Scaffold Ga0212088_10736027


Overview

Basic Information
Taxon OID3300022555 Open in IMG/M
Scaffold IDGa0212088_10736027 Open in IMG/M
Source Dataset NameAlinen_combined assembly
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)580
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake Hypolimnion → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Source Dataset Sampling Location
Location NameFinland: Lake Alinen Mustajarvi
CoordinatesLat. (o)61.5637Long. (o)22.044Alt. (m)Depth (m)4
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F038518Metagenome165N
F066387Metagenome126Y

Sequences

Protein IDFamilyRBSSequence
Ga0212088_107360271F038518N/AEDVNYNLSVVTMHQRASREEKIDANWWEGAMRFGMLDLDEEPVYRLGSYPVKVMRWIRHLIFTLHAERRDVQLTIAELEPKVAALSEIIGDAIK
Ga0212088_107360272F066387GGAGVSKAMQIQEDSTYVLDENPAALLTGAEIDAVALYRCLKIVRLWSQSSVLSRSESKSRHDEMIEEEKRIANLYAATLFEIGCAFGIETADELKVRIEAAS

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