Scaffold Ga0212088_10082243

Overview

Basic Information

• Taxon OID: 3300022555
• Scaffold ID: Ga0212088_10082243
• Source Dataset Name: Alinen_combined assembly
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3095
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (87.50%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → unclassified Planctomycetota → Planctomycetes bacterium RIFCSPHIGHO2_12_39_6 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake Hypolimnion → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Source Dataset Sampling Location

• Location Name: Finland: Lake Alinen Mustajarvi
• Coordinates
  • Lat. (^o): 61.5637
  • Long. (^o): 22.044
  • Depth (m): 4

Associated Families

Family	Category	Number of Sequences	3D Structure?
F050107	Metagenome	145	N
F066389	Metagenome	126	N
F102366	Metagenome	101	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0212088_100822432	F102366	AGG	MAGPISIERRSAAMKMVLTHLRMPTSDVARFEVTFTGNSDCFVARIDFPAHYGGGYQIFEGILGYKVSPSSSVMGKNRVTPRFPLRSTIPPQTAEDLREEERQLRMRLDYGETFNNDRVS
Ga0212088_100822433	F066389	AGG	MPPTEDLNLSVGTEITATDVPYGSSYTNGHLYGAHAMGNILSGDLQNPDSAPLAEAFDPRTGTTYHGFRFPGNVVQDSRIPVGTIAMLNSNCHMVLMAPDGRTVECDVRDVMLNVDPARAMSERVALKAGEFGSGTIRGTMQMSPESHKGLMWAFGFTDEPKPVIVPEEDLFEDRTW
Ga0212088_100822435	F050107	GAGG	MAGLWFKPVCDDLLGKIHRWWVNYERGEIFSTREWLDREGNKVDKPTRYAYRIPFRPLEIQHLVSILEALAPTNSLTKDMKELHESMKHRFINLNLKNRPRLLPTGEWMVTLAWYKADIEEVLEILLRARDNRPSFEDTRKEQERSGKELFEL