Scaffold Ga0212124_10039454

Overview

Basic Information

• Taxon OID: 3300022553
• Scaffold ID: Ga0212124_10039454
• Source Dataset Name: Powell_combined assembly
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2851
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Patescibacteria group → Parcubacteria group → Candidatus Nomurabacteria → Candidatus Nomurabacteria bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Source Dataset Sampling Location

• Location Name: Canada: British Columbia
• Coordinates
  • Lat. (^o): 50.0621
  • Long. (^o): -124.7214
  • Depth (m): 150

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002824	Metagenome	527	Y
F017088	Metagenome	242	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0212124_100394541	F002824	AGCAG	MTKITAPVLKPTNGGASKEENAVLAAAKTVLNPEEKKTEEQKPLLKVEPEKPVVPAPEPVKEMTLMEKILKVENLQLVIEKRAKLVQTRSELERFQTASNDFNCSMRLNDSDGNVFTTSFTPGIKKVIDFLKSSFDASIVDVENKITF
Ga0212124_100394544	F017088	N/A	MNNFNSYSGDPRQIIARFASKCHTCGKPIKKGEQIIYWPNGKHAGHLKCDEADYRNSLASFEDEERYNSQYR