Scaffold Ga0212118_10031345

Overview

Basic Information

• Taxon OID: 3300022552
• Scaffold ID: Ga0212118_10031345
• Source Dataset Name: Guaymas_combined assembly
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3231
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (66.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Hydrothermal Vents → Sediment → Marine Hydrothermal Vent → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Source Dataset Sampling Location

• Location Name: Mexico: Guaymas Basin, Gulf of California
• Coordinates
  • Lat. (^o): 27.0078
  • Long. (^o): -111.4071
  • Depth (m): 2000

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009582	Metagenome	315	Y
F028993	Metagenome	189	N
F067298	Metagenome	125	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0212118_100313451	F028993	N/A	VNRGGGKMGKIAEKASRKRAERIAVSETYYKEGVEEPSKDWLTEFKRAKDRRNAGLRRAMDEGLFEKGAERVGTEGWKENTLAKADRWLTGATSEVAQKKYEEAMSDVEECIERARKAVEGMPTTTIEQRAERSKRFQIEMHKCMEEKKRRH
Ga0212118_100313454	F009582	N/A	MRERGRRREFVGGTGREVKEARVDVVLQRVEEEIGEEITAYPQHVRRYGVNNIFQRAFAYLLGWQSNGKPIKVGATAGGLLKVAISGAGFEQIDTLEGTAGVEWSSALQFAWTPNRIRFEALDYPYLAKFSTDGVTWSDAVYVDGDMPRDFDINARYVKVRRYGGTNASYFIIGMR
Ga0212118_100313455	F067298	AGGAGG	MVVVIREEEAEKIIKARNIKRRIRELDRQIAELQRKKADLLKEYADLGISIE