Scaffold Ga0212118_10016278

Overview

Basic Information

• Taxon OID: 3300022552
• Scaffold ID: Ga0212118_10016278
• Source Dataset Name: Guaymas_combined assembly
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4621
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Hydrothermal Vents → Sediment → Marine Hydrothermal Vent → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Source Dataset Sampling Location

• Location Name: Mexico: Guaymas Basin, Gulf of California
• Coordinates
  • Lat. (^o): 27.0078
  • Long. (^o): -111.4071
  • Depth (m): 2000

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007460	Metagenome	350	N
F017081	Metagenome	242	Y
F056226	Metagenome	137	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0212118_100162782	F007460	AGGTGG	MDDEEEMGMGTAIFVVMLNIVFAIIIFFLIGSVMCGILPPLTNVVGVDETTPFAQALTVVPNLVNVFFYLPLIFIFTMFVWLFKYIVKRHKYTYYQQGGEEEEW
Ga0212118_100162784	F056226	AGGAGG	MRAYDILLFLVCLEASIGFVASIDLFSTTYVDPSAVQLTDWNVQEIQNQSSSPSLLDTAIDGLVKAIPQFLNMLLAIAIVYIPLTQTLGVPTEVALLFQGAVYLIYVWAIIQFLSGRSMKYME
Ga0212118_100162785	F017081	GGAG	MVERGDWWKGVCILGTLILLVATAQAIDITEITATETQIKITIANASSDGYIFVSPINKSFPYAYSHQGNGTYTITATFLKPNSTYYVKVCDNDNCSNVISMNVSKEEKLLEQNFTAPFNNLMQGGNLLNISKLGETIPSVYTSLLTDMFWAMFFGGIFLAYWIRQEDVMLPSIVGMISGVAMIGLLPPSAQHIAYILLVISIAGTLYTIIKARR