Scaffold Ga0212118_10009318

Overview

Basic Information

• Taxon OID: 3300022552
• Scaffold ID: Ga0212118_10009318
• Source Dataset Name: Guaymas_combined assembly
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6252
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (83.33%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Hydrothermal Vents → Sediment → Marine Hydrothermal Vent → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Source Dataset Sampling Location

• Location Name: Mexico: Guaymas Basin, Gulf of California
• Coordinates
  • Lat. (^o): 27.0078
  • Long. (^o): -111.4071
  • Depth (m): 2000

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009582	Metagenome	315	Y
F011723	Metagenome	287	Y
F016098	Metagenome	249	Y
F067298	Metagenome	125	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0212118_1000931811	F016098	AGGCGG	MSEERKYVYMRKTQSGNGVRMRDGETVYIASIRSLEAFLQGEREFVAFAKMPNRKIPNENNERNLIYTWCDKCQGLRFFRKISEDKWRCEMCGTERTTAELIEKVRSILETD
Ga0212118_100093182	F011723	GAGG	MVIYNKGLSRENSTDEGKEIFSLTSKEEEKYKVRRIVITDVNTNPLIMEIWVERDRISENIPLEVASDIAPERVIDLDVEVPVGHKFSVKIKPQSSGNQGSVRGWVEYEIVG
Ga0212118_100093183	F009582	AGAAGG	MSVRRGRREFVGGTGRAVKEARVDVVLQRLEENIGNEINAYPSHIYRYGVNNIFQRSLAYLFGWKTNGEPHKVAVSSSGLLKVAISGAGFEEIDALEGTATVTWSDALEFAWTPNRIRFEALDYPYIAKFSKDGVTWSDDIYVDNATPRDFDINAKYIKVRRYGGTDAKYWIIGMR
Ga0212118_100093184	F067298	AGAAG	VITEEDAEKIIRALNLKRRIGELEKQIGELQRRKAKMEQEYENLGIKIE