Scaffold Ga0212118_10007066

Overview

Basic Information

• Taxon OID: 3300022552
• Scaffold ID: Ga0212118_10007066
• Source Dataset Name: Guaymas_combined assembly
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7273
• Total Scaffold Genes: 14
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 12 (85.71%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Hydrothermal Vents → Sediment → Marine Hydrothermal Vent → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Source Dataset Sampling Location

• Location Name: Mexico: Guaymas Basin, Gulf of California
• Coordinates
  • Lat. (^o): 27.0078
  • Long. (^o): -111.4071
  • Depth (m): 2000

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009582	Metagenome	315	Y
F011723	Metagenome	287	Y
F016098	Metagenome	249	Y
F028993	Metagenome	189	N
F091133	Metagenome	107	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0212118_100070661	F028993	N/A	MADIVERAVKKRSERIAVSEAYYKEGVESPTKDWLEQFKKAKDRRNAGLRRAMEEGLFEIGAERVGTEGWKEATLAKADRWLTGATSEVANRRYEERMRDVAECIERARKAVEGMPTTTIEQRAEKSKRFQIEMAKCMEEKKRRR
Ga0212118_1000706612	F016098	AGGAGG	MSEERKFVYMRKTRSGQGVKIRDGEIVYIASIRSLEAFLQGEREFVAFAKLPNRRIPNENNERNLIWTWCDKCQGLRFFRKISENKWRCEVCGTERTAMELIEKVRSILETD
Ga0212118_100070663	F011723	AGGAGG	MVIYNKGLSRDNSTNDGKTIFTLTSKEEEKYKVRRIVITDVVTNSLVMEVWIERDRIGENIPLEVIADATPERIIDIDAEIPVGYTFKVIIKPQSSGNQGSVRGWVEYEIIE
Ga0212118_100070664	F009582	N/A	MREQRRRRGFVSGTGRAVKEARVDVILQRVNEKIGSELNVSPSRIFRYGVNNIFQRSFAYLLGWKTNGEPQKVAVTEGGLLKVGISGAGFEEIDVLQGTATVEWSDVLEFSFIPNRIRFESLDYPYCVKFSKDNVTWSEAVYVDEDTPRDYDICARYIKVKKYGGTDAQYWIVGMR
Ga0212118_100070667	F091133	GAG	MGIFDIWDTWSDWLSDWWNAFKDKIWDIKVELWSWVDDIAKYWVGRANEWFDILNHTWSEVEDLMEQAKSYADDIVTDAVLKIDNWIATFGETVAELWDKIEPYVSNVITPLENALDTIQNVKIPSLEDITNTLKESVDNILNTDIPLLNQSVSDLWKEANNIWNEIWNNIWTSLNNAWSDINNLWNTFAEIPADVWNAITEGWEGFSDFLLSQGERFVEKILDIDIPVDDIIKDLERKFKGGEK