NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0212118_10003926

Scaffold Ga0212118_10003926


Overview

Basic Information
Taxon OID3300022552 Open in IMG/M
Scaffold IDGa0212118_10003926 Open in IMG/M
Source Dataset NameGuaymas_combined assembly
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)10029
Total Scaffold Genes16 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)15 (93.75%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Hydrothermal Vents → Sediment → Marine Hydrothermal Vent → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Source Dataset Sampling Location
Location NameMexico: Guaymas Basin, Gulf of California
CoordinatesLat. (o)27.0078Long. (o)-111.4071Alt. (m)Depth (m)2000
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F009582Metagenome315Y
F016098Metagenome249Y
F028993Metagenome189N
F091133Metagenome107Y

Sequences

Protein IDFamilyRBSSequence
Ga0212118_1000392610F091133AGAAGGMGVFDVWSSWTDWLSDWWDAFKDKLSDIKAELWSWVDDIAKYWVARANEWFDILNHVWSDVTDLFDEAKRYAGSLFEDLKDYAEDLMEEAKTYADDIVTDAILKIDNWIAIFGETVAELWDKLEPYVSNLITPLENTIDTIQNVKIPSLEDVTNTLKESVDNILNTDIPFLNQSVNDLWNEANKIWDEIWNNIWTSLNNAWSDINNLWNTFAEIPADVWNAITEGWEGFTNFLFEQGERFAEKILDIDLPVDDIIKDLERKFKGGGK
Ga0212118_1000392613F009582AGAAGGMSVRRGRRQFVGGTEKAIKEARVDIILQRLEENIGNEINAYPSHIYRYGVNNIFQRSLAYLFGWKTNGEPHKVAVSSSGLLKVAISGAGFEEIDTLEGTATVTWSDTLEFAWTPNRIRFEALDYPYIAKFSKDGATWSDAIYVDNATPRDFDINAKYIKVRRYGGTDAKYWIIGMR
Ga0212118_1000392616F028993N/ATYYKEGVETPSKDWLTEFKKAKDRRNAGLRRAMEEGLFEVGAERVGTEGWKSATLAKADRWLTGASSEDANAKYESAMRDVAECIERARKAVEGMPTTTIEQRAEKSKRFQIEMAKCMEEKKRRH
Ga0212118_100039266F016098AGGAGGMSEERKFVYMRKTRSGNGVRMRDGEIVYIASIRSLEAFLQGEREFVAFAKMPYRKIPNEDNKRNLIYTWCDKCGGLRFFRKISEDRWRCEMCGTERTATELIEKVRSILEVD
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