Scaffold Ga0212118

Basic Information
Taxon OID	3300022552 Open in IMG/M
Scaffold ID	Ga0212118_10002032 Open in IMG/M
Source Dataset Name	Guaymas_combined assembly
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300022552 Open in IMG/M

Scaffold ID

Ga0212118_10002032 Open in IMG/M

Source Dataset Name

Guaymas_combined assembly

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	14251
Total Scaffold Genes	27 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	13 (48.15%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	4 (66.67%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

14251

Total Scaffold Genes

27 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

13 (48.15%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

4 (66.67%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Hydrothermal Vents → Sediment → Marine Hydrothermal Vent → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Hydrothermal Vents → Sediment → Marine Hydrothermal Vent → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Source Dataset Sampling Location
Location Name	Mexico: Guaymas Basin, Gulf of California
Coordinates	Lat. (^o)	27.0078	Long. (^o)	-111.4071	Alt. (m)	Depth (m)	2000
Location on Map

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Source Dataset Sampling Location

Location Name

Mexico: Guaymas Basin, Gulf of California

Coordinates

Lat. (^o)

27.0078

Long. (^o)

-111.4071

Alt. (m)

Depth (m)

2000

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F036512	Metagenome	169	N
F040420	Metagenome	161	Y
F069552	Metagenome	123	N
F096390	Metagenome	104	N
F102256	Metagenome	101	N
F102257	Metagenome	101	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0212118_1000203216	F102257	GAGG	MGYYISNIIGIRTGGVFSGETDVEDVKNRIKKIVLEMREESRKEGSEIFDSDLGWKDGDPSHCMCEKELVGSKGSYIVLAGVFNYWTFNVVEQFAKRLSQEFGTYVMLMSWDEEQDIIKSDVYLGGKSIRENNEDPISSALRRVV
Ga0212118_1000203218	F096390	AGGAGG	MADIVKEIINLFVYSITHEVEAHGKMLTDEEKEEMLQRAKKRYEKELIKIFEKHDRL
Ga0212118_1000203225	F069552	N/A	MKKNSIAWFVVECSKSITIQLRCFKCRFMFPDVPRQLAKNFRSLERGAYSLVFALKNIDCEEEYFLNNIIEVDVSSTGFGKADVEVNTTIPNDEEYQRLRKLIDGWYKQKIDTFPFFLGIVMYSSYRDWRKMKELGVRFLKLWQDGFSKIGWKPEDVSDYEYYFGKDGRSEPPKFLGTHTYWD
Ga0212118_100020324	F040420	N/A	MKIVILFVMGILLSLSLSQFLIVDSTDSHPYINGTYVCRDYSRDLILSASKYHIYLDYIYVPEKNHMMVGLYNPLENSIEIIEPQTDEIIGCVKEDDKNYIRIPVWNSCFYYSNVKIA
Ga0212118_100020325	F036512	AGGAG	MYWKVPNYLKRYIRIQDILKNIFRPCDCGEELKKCEKEKQYCAKRIESLSRTLTHSIVLPEVTEHRKYVKEIKPWKIAKRIGNFDLVTADESYYALPLNSWIDVLNSIQPQVEKVLKKWRRDISDCDDFALVAASAVAASFAYDPFEKQVAFAITWSRSHAYNSFITTEGTWEIYEPQSNAIVGQLGKTTGIYKTEKIWFMG
Ga0212118_100020326	F102256	AGAAG	MSRCKLNVYSCKNCYLEFYYENHITHCPFCGNKLKYIGRVHENEIEGPIYMLKYSTGEKMQKRIEEEEAIKEAEESWYLWEE

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0212118_10002032

Overview

Ecosystem & Geography

Associated Families

Sequences