Scaffold Ga0224452_1010520

Overview

Basic Information

• Taxon OID: 3300022534
• Scaffold ID: Ga0224452_1010520
• Source Dataset Name: Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM2_30_b1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2410
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment → Soil And Sediment Microbial Communities From The East River, Co, Usa

Source Dataset Sampling Location

• Location Name: USA: East River, Colorado
• Coordinates
  • Lat. (^o): 38.9201
  • Long. (^o): -106.9487

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008566	Metagenome	331	Y
F009631	Metagenome / Metatranscriptome	315	Y
F026141	Metagenome	199	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0224452_10105201	F008566	GGAG	MKLKDITESSGRWSTPSGSLEANAPVADGGLVDLSLWGTSIIGLAVQCPDGKYFGSIRAPSNVYDHVLEFLKRNQGRKLREV
Ga0224452_10105202	F026141	N/A	MTPLSKCLVQVGALVFTEWLLLTPPGNDVTRPQKEWHQERSFDTLQQCASYQEREADEWIKRMETTPKGSTDYVTYDRTATRFLLGKCVLAESAS
Ga0224452_10105204	F009631	AGTAG	VKQWGIERYKGFLITGTAKPTFATRFDWYSQGIVLRPGRLSSIVEVKRIEGPIFNSKEAAEQHGLELCKEWIDKRGPNVEWPNRQS