Scaffold Ga0224534_1014470

Overview

Basic Information

• Taxon OID: 3300022524
• Scaffold ID: Ga0224534_1014470
• Source Dataset Name: Peat soil microbial communities from Stordalen Mire, Sweden - 717 E1 20-24
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2282
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Peat → Unclassified → Unclassified → Soil → Peatland Microbial Communities From Stordalen Mire, Sweden

Source Dataset Sampling Location

• Location Name: Sweden: Norrbotten County, Stordalen Mire
• Coordinates
  • Lat. (^o): 68.3532
  • Long. (^o): 19.0469
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003186	Metagenome / Metatranscriptome	502	N
F023143	Metagenome / Metatranscriptome	211	Y
F103703	Metagenome / Metatranscriptome	101	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0224534_10144701	F103703	N/A	GAMANFEEISVNPSDFSNPPAKGDWVTAWGTQYVVTTLRQPDAYGMLNLALLQRAS
Ga0224534_10144702	F003186	GAG	VINPNTILGEWVTALQSCPDLVTAVVGDGNNIRAFMEGLATDNNLRLAILQMPPGSILVAWNGTTPRRLTGGALHFAHRFSIYLRAPEQNSTATYADLFWLLVSAIPTGAPSWSSLLHFQIDPNCYPMDMDLPSAQRNTVVVSADGATLDYFEVQATLVEQGNPGGE
Ga0224534_10144703	F023143	AGGAG	MDWVFMQSPEGEVKEVEATAAELTPLMVAGWRQVPPPAATGPKPATPVQEKT