Scaffold Ga0224534_1009620

Overview

Basic Information

• Taxon OID: 3300022524
• Scaffold ID: Ga0224534_1009620
• Source Dataset Name: Peat soil microbial communities from Stordalen Mire, Sweden - 717 E1 20-24
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3080
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (28.57%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Peat → Unclassified → Unclassified → Soil → Peatland Microbial Communities From Stordalen Mire, Sweden

Source Dataset Sampling Location

• Location Name: Sweden: Norrbotten County, Stordalen Mire
• Coordinates
  • Lat. (^o): 68.3532
  • Long. (^o): 19.0469
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F045016	Metagenome	153	N
F045053	Metagenome / Metatranscriptome	153	N
F052500	Metagenome	142	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0224534_10096203	F045016	GGCGG	MGKRPTCGNVRRGAGVGKKDAMTLAIAQPPVVTGASLVNAACLKYQEALDKFKRVEAEWQTLPTQEAVMLVVETQGILRETRQLLDQGTSQMTGMNSPEWGEATGQTTRDEVAECLQDTHDLGNRVDDLLAGCDRLIETCLAHQEAYERYQTGKALCIVVAGAVLTIGVALYFLLR
Ga0224534_10096204	F052500	N/A	MTTQAQRHQASEIAGQITKLQGIKSAVVDDDDGYGSFNLFIELRNRLEGHYHLSRRIEFEISLHGLMARITRIIERHGARLEWHEPPRRQYARPGHGKKLFEGYSTDSYKISVHIPQPAEDVQRQRETQLAFA
Ga0224534_10096206	F045053	N/A	MTTVASYRIPGFGTVDVVQHNDGRNRVWDLFAASGECLNEGHPFRSKPRRKQVEAFLAHDLKEALARIEKECERLKIAQEDLDEVIHETAQTGNLRLNQVSEEKQQERLITTAEEQAARINNGGRASQLVYLLEAYGEAGALKALQDRHETNG