NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0224534_1000352

Scaffold Ga0224534_1000352


Overview

Basic Information
Taxon OID3300022524 Open in IMG/M
Scaffold IDGa0224534_1000352 Open in IMG/M
Source Dataset NamePeat soil microbial communities from Stordalen Mire, Sweden - 717 E1 20-24
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)30369
Total Scaffold Genes34 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)29 (85.29%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Peat → Unclassified → Unclassified → Soil → Peatland Microbial Communities From Stordalen Mire, Sweden

Source Dataset Sampling Location
Location NameSweden: Norrbotten County, Stordalen Mire
CoordinatesLat. (o)68.3532Long. (o)19.0469Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008017Metagenome / Metatranscriptome340Y
F100370Metagenome / Metatranscriptome102N

Sequences

Protein IDFamilyRBSSequence
Ga0224534_100035217F008017GGAGGMKAEALTPGANVSQALTKGACPICGILKDFQWTLVETTRPQSDLRVCNFHGWALARSRAKLSRSTPGESVTTVFLEMLKPPLVGKVNSGECTLCHRVVEEEINRLRELAQKLQGTMFAQWMKSQGTLCLEHSRKVKEFVPLRLRTLVDEIVERNRAELQQELESFLEQLKHGIHEGGGLLGRAAEFLVGQRGL
Ga0224534_100035230F100370GGAMTPDEASVSGVPQKTKTATALQRLPVGERTSPRQFLPACAETGDSSDFVFGRDKEIAELRERLWARESFVLHGSSGTGKTFLLQRVMQALPGTLYCSDAASPQVVFQSLALALLASRDRFVRSCFRNPRVVNTKSAISLRGIVLDALRRGTYLVVLDHLRGPAAALSADARDLMLYGGTPVVAVARSAHMEDLGFLTPIFALRSERMRLGNFTRSQAMQFAEAVARRTQLQATNLPEFIERVVELGQGSPGAIVRMLQMAVRPKYRLDGYVKTSPLYIDFRLAWHAENAL
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