Scaffold Ga0224534_1000001

Overview

Basic Information

• Taxon OID: 3300022524
• Scaffold ID: Ga0224534_1000001
• Source Dataset Name: Peat soil microbial communities from Stordalen Mire, Sweden - 717 E1 20-24
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 452495
• Total Scaffold Genes: 479
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 377 (78.71%)
• Novel Protein Genes: 36
• Novel Protein Genes with Ribosome Binding Sites (RBS): 33 (91.67%)
• Associated Families: 36

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Peat → Unclassified → Unclassified → Soil → Peatland Microbial Communities From Stordalen Mire, Sweden

Source Dataset Sampling Location

• Location Name: Sweden: Norrbotten County, Stordalen Mire
• Coordinates
  • Lat. (^o): 68.3532
  • Long. (^o): 19.0469
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F023510	Metagenome	209	N
F024018	Metagenome	207	N
F025900	Metagenome	199	N
F030957	Metagenome	183	N
F031325	Metagenome / Metatranscriptome	182	Y
F031336	Metagenome	182	N
F034034	Metagenome	175	N
F036061	Metagenome	170	N
F040983	Metagenome	160	N
F040984	Metagenome	160	N
F041558	Metagenome	159	N
F042691	Metagenome	157	N
F042700	Metagenome	157	N
F042703	Metagenome / Metatranscriptome	157	N
F044277	Metagenome	154	N
F044872	Metagenome	153	N
F046150	Metagenome	151	N
F050080	Metagenome	145	N
F050093	Metagenome / Metatranscriptome	145	N
F050107	Metagenome	145	N
F050108	Metagenome	145	N
F052342	Metagenome	142	N
F053027	Metagenome	141	N
F055379	Metagenome	138	N
F056265	Metagenome	137	N
F057845	Metagenome	135	N
F057847	Metagenome	135	N
F062380	Metagenome	130	N
F064338	Metagenome	128	N
F066389	Metagenome	126	N
F068372	Metagenome	124	N
F071899	Metagenome	121	N
F071901	Metagenome	121	N
F086512	Metagenome	110	N
F093143	Metagenome	106	N
F094792	Metagenome	105	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0224534_1000001102	F040983	GGAG	VDFYRDISATIDLREELHSVIHGSEEIVGQGRTVILRRMTNTTCPGCWDPKTGGSVRPNCRYCQGEGWQFYETQEIMALYRGVAPVYKPGVLATGEYPQNAMGYTDQNRCTAYVEVFRDDGSQVYPDYERYTLQTAKAYDKLYETKVDPEGNSITDSSGRFTRTVKWKVLSVVPTFGDNGRVEFWELGLEKENV
Ga0224534_1000001103	F044277	GAG	MQNLIFHISLPKGIKLVNGATLMKDVTFDFISQITPYYSTIDMVRLAAGPTLKKLSDITIACQIYRSSNEADLITAARVPLSGLQHTRLIGSRLQYVTALASRDLMLNVVSLLGPGAHVLANFSVDRKADNKQRLAEFEDSLKLYDVVLRSGGRVMPGGRPDFHFAAKGVLDWAERTPARTWFANGMGANASSMDPGSPTGGRGKPIKFFASPTCSPPMSSMRIGVYQPGFPVSQFYPYAMGQ
Ga0224534_1000001121	F056265	GGTGG	MANGDPQDNIAASVAASYDMPIAVSVIEKLSKFPFLQQLGYNGQLSWLKGGFLGLQDFFDEMTTYSSAADILQIAWQLIQPRVPLNLDVQKNLYTTDSMGTVGNAFQQLVGFQQTFAVNPDDLSDSTGSAVVANNLPSS
Ga0224534_1000001128	F031325	AGG	MRLQFIPIWASLALLAGTVGTSAQSTSTADARKGKDQPSPRQVKVAIDPRSTGEAQSLLIVKGFGNSCPNVSIVRDESEAEYVVLASESDPWRGFLLHYYITVYDKQGKLVFATDKNHGKSASEAACRFINAQK
Ga0224534_1000001132	F064338	GGAGG	MATPGLIPISEDLALFPVPTENVNGLLATSEDLGLTVEEKQELDNYQTALRILGPAAGAVLMCPGNQENVADEDKCPYSSKCPLLRMHKAPADKMCPVERLIVEERFNAWCRELSTDPVLAKESDRVAISDLCWIDLQMQRSLHILSKGDEARLTVTNPKDVHPETFLPISWEKVIHPNVELLVTLQTQRRMILKDWMLTPEQKWKREKAEGKGSGKDIASKQSARADKLRAIKSSNED
Ga0224534_1000001135	F036061	GGAGG	VLENSNNPAVTQQGVHAVETPADLFSDPPFGHLFAELTDLAAATAASFRTVLVPPDTPLFCFYCHDTEAPEYRLRRKAGKYVALCHRPGTIEGCWDRDVAPMCEYKNHEAVQCDQVAEWVVAFGKDMLMRTHRCLIHVPPALSDVSEHRVFPI
Ga0224534_1000001136	F024018	N/A	MRPGTGHRRIHLSAHPTTAIDIAKLLAADNVSTADRIWAVDFEAKMPAELITEEDLKCPDCGEVHDPSLENARVVADTVTVLGGPDAQVSVDRVREYILNRELEAGLRMTDFVLTGVKLLAAAEVV
Ga0224534_1000001138	F041558	AGGAG	MPPLKNQPKKATAKAKPAPVKPTAKTEPAAAPAVVAPQAPKFTAGDLVRKALQLRQQHTLNAPAPTTEVPKGSKPTIVEFKVVLSDGTVLHATGKHADVMVRFSNECQEICQTQGLAAYNGPPMTRYTAQEWAAKNA
Ga0224534_1000001139	F042700	N/A	MDAQKEAYKLLKEHGEQIRHNKHEAWRVNGHLITITKTKTDDRGWLNKLCEIRRCLRAPAEEVYRQGRCNGKGRFTDAPVSQHSVSCAGPAATR
Ga0224534_1000001142	F071899	GAGG	MQARVKLTPRIIARLIVGKPVTVNLPAGTSSLSLVTEGKFHEFLRAFHAPEEFDPETSHTEVIGLFDLIFGKH
Ga0224534_1000001146	F023510	GGA	MVKPIDPWPAPGPNSHIFFKVTAVNPNHYGTPPTTFIVEALNEEAAVECIKRAIWAGILLPHSYNGALNPWPTYFQSNALRYLLDGMFVAEELETLPTLRFFPDPCVRDEWLRYQLSWMARLVEDIQKWWDAMLARPFFTSWFGR
Ga0224534_1000001150	F031336	AGGAG	VLNGDVIILNPPKDPSWFSDASQSLSLFVWEHRDLIPLLMAEVALAVLIFAGFFWWERRKNKQAFQVGELERMYSAEPIPWPR
Ga0224534_1000001153	F044872	GGAGG	MNTGLLNSFASMVKGSILVTDAIKAAFSKFEGGIPSDDQVLVAISEVVFTVTLNKDARQVLSFYLIQLYANQLFISDPSSEFGVCMRIARREIDTLLSFSVLDRIAKYVWEHREQFLLLWTVFAENSAAHPESTSDILGATLTESIQLLEAA
Ga0224534_1000001154	F062380	GAGG	MPSDFNDSECNDFEKLLFADPGSTGTCKLIVAYHPGFPLALGRIECASGLPIDVRVNVLEATPVLHTAELVFTGKTTDLCELQMRLTQWATQFPHLPPMPEEALYARDNPSAPSGPPEGVDQSGV
Ga0224534_1000001156	F050080	AGGAGG	MASSFVSRQRNQQRNTPPVAIKPFVRAAQNFALQTKQNREILDGQGLSVGTEVYTEIRMQGTVLAVRDEGIEDEFGRQYIGLVIQINPDKDRFVQTADPTLHAQILALKQGDLVYVTSEWHRNSSGRGFHARAKTITVLAPASTPGPVAVEATADALAAAA
Ga0224534_1000001157	F025900	AGGAG	VPVSRTRTPKKNRNNLAPKSKEAQRKIRRWSFVVEVTVGDTTKTFQPPALTIGNLGSARAAAETIRADIVSLDQFKDAKVVVKPRAEETVSLTILNQINGLNEQSRLLTFALKRAVTDVVKLDTAGCPCHEIEDEAARQVEFDRHVTERLGKYVMEEQQAMRRQQMIDAGIDPDQVLNNQLPAEQVPAEFQAAPVVEEAPAEQVNTDPFPDGEFGKEAA
Ga0224534_1000001180	F093143	GGGGG	MSASHATIAAGYISMAEEELEQDLASTMKTVLDREPNIAHRALVFVLQDECLVTFEKADSYIKSHREV
Ga0224534_1000001192	F068372	AGGAG	MPDNCDFCSQHLATRHYDAGRDILVRMFVESGPEVGPAHNYTRVWAACERCSEFIDRGDIAGLKALVFSLWNESPEFVALMADPDGRALAKQMLDTVYDTLATTTMVRVK
Ga0224534_1000001212	F034034	GGAG	LDSAERCQLIADVAEYLSFRMSEGVVIGSNAWFDLAWVIFPAIAQDKVCYFPSARMKILALLKKNPPLYARLAEFVQINSAAYPLLERKRVNGDPDMSKYLDSLGIHAA
Ga0224534_1000001263	F057845	AGCAG	VWCFYLEKGIPVGNHKAGMSKNPFGGYDRLDKCNLQGPSILGGLLIDVFSDVPGERTMICKMFLDDCNNYVNYALAAQNGTSLDQFFYASEFLLRVRASKPETWQGARLMRTTYFDEYLGRRVTRAQALTDDQLRMGCADYLWGLMEMPMEFEDFIAALRAERRKRIQKSQEQVDEFIALMNSPSLSRNILHKETIPLKLLSQSPEDILTDPTINPVDLCHLISYQPRRRRRPTGSPAGHCVRGRRIRICEKKPAVRQAQPTKGDLFACLETNSPESADSAGCCAVGLSA
Ga0224534_1000001277	F071901	AGGTGG	MGTFNVFSYLDPALVKEEMGDPYASKTPAVWPSEASAERVDKTLFNIVGKCHRASFMRMMGFSVTNPADATGAWKWLMGRAIESGLTDQAKLAGIYAANGVKHFIRDITLSLEFDVIAVDPVDKRGWILECKSYSGYYAKKEIETMNKPKLENLIQICLYILEARTGKRLKAMIQKSLDERKVLDKKVRDFKKNGEVFEHRNRSEADKKMVKSMSDGPIGGKLLYVDRDSASRKEFTIEIYQDFDGFHYPQVDGVPFKIFTMESVYSRYKTQQGYWFRARAQGAQNLAQKGILPPPSLKLVLCAQDVVDGEGFVQKTREDLIAESNYLTLLEDEVRLLPSSFWPPAEYEWSYSPVRVELLFEHGAIGKTKYNDYKKDKIKRLGDWQCSYCSVAGHCLKEARPELQYLITDLQGLLSDTSAEVEIG
Ga0224534_1000001282	F040984	AGGAG	MSTRNYKVEFDPTFFGGNYTGHGNHALIPEQLVEKVGMSAAFLKTTGHNPANIVHFAEDLRFDSKGLLCTDEPAIDTSTDSTVELAAEGTVQIPADEPIQFPEPTVIEIGDQPVQIETESQDVPRLSRRKQAA
Ga0224534_1000001284	F053027	AGGA	MLLTERQIDLRLKCPMFDMEDRHGPSSYECAQKLLRWAVLDAFKGRLVSVATLRGKFESIWNGHTAGWAPDHQQAYYAGLRAGNTAARKTYLFLQHYEVLKPVEAYSVECAGDCIEGEYAMVLRRHDRRTDERPMILQTHEWRPAYCQQPGVIELIRYVHLMASTDYTVPGVYHLPLFRGEPWKMKNFDLPLVRKAVTSILDAIRNTGHPVPGSHCEDCATKPCRSLAHA
Ga0224534_1000001285	F057847	AGGAG	MPETLPVFMKGERKPINCFRDAEGFLVIDAVIGDDDLTVVSPDSGEERFRITDGEVIDIRPHEHEWAIDHSLCTVCNKSKQQINEEQDEQTHPTAVQ
Ga0224534_1000001286	F046150	GAGG	MNRPTQPQSSRLRVQAATSAVNAPIECPSCGSIFFIEAQAGMYTTSGAGYRNVNQAPQKVYLCPCGEIMIPSNYSSGVPAGSERDLFVQSLKLAITRRNSTTLDQVAQGTVSLAEHNRLKAQFEELATRFNTWAAGGEVPEPVELATNGDEETPEEEQSPEPAARITMRELGAAPLIATGTRGRSAAAAVQSTGDHKEITSTPATIYTGGARERMKRQGGQ
Ga0224534_1000001289	F066389	AGG	MPPTEDLNLSVGTEITATDVPYGSSYTNGHLYGAHAMGNILSGDLQNPDSAPLAEAFDPRTGTTYHGFRFPGNVVQDSRIPVGTIAMLNSNCHMVLMAPDGRTVECDVRDVMLNVDPARAMSERIALKAGEFGSGTIRGTMQMSPESHKGLMRAFGFTDETKPVIVPEEDLFEDRTW
Ga0224534_1000001291	F050107	GAGG	MAGLWFKPVCDDLLGKIHRWWVNYERGEIFSTREWLDREGNKVDKPTRYAYRIPFRPLEIQHLVSILEALAPTNSLTKDMKELHESMKHRFINLNLKNRPRLLPTGVWMVTLAWYKADIEEVLTLLLEAKSGKSQTIESLAERQKEQGKDLFEV
Ga0224534_1000001295	F050108	GAGG	MATLAIEQMQFPFMPPPAPLPTELHNLKVNRLEPGQLGNTVRRGDKWANVPRGHDLLLTQGPDHKMVGHGRVEKVWTGPFNEVPATVLDRNHSGSQSYSSVLLAMRDAYGADFSEDEIVVFLDYKRIS
Ga0224534_1000001298	F055379	GGA	MGTWQTLLDVCPYIPIPLMAILFVLGLWHEIVRSNRRIAADIKPTSIQDSTLYKIEPSKRYKTPFADRAIGYLT
Ga0224534_1000001299	F050093	GGAG	MTEETTGLLEKELAGVNEQIVRLEKYKTALNAALLARLDLEGFISARPQVYSPQTVTLTALTEGKDSPNARPNSLEMARVVLLNLDGEEKTPDEIRALIKKTYGIGPAKTLDQMLYKRASKGTMFYKTAEGRFGLLALRATTEEVRTPTTAVA
Ga0224534_100000175	F094792	GGAG	MPPTGIQTFYYGKNLPARAIAIAQVTAEDVSPADLIDIVNTPYLPGSLGIWAASEGLATSPNFTAPDYNQSVTITGDVLYMVQNQFFQITNQFAADGVTPLYFYHNFGQSVSGATILNLDGSVITPAPTVLFSGNWMYHDVPSTLPYQVRYVDSAGRVQISLLHYNQVMPLSTNGDTSKGYAFTGGMIELASAAVSYSIRFLVQNGYQALPPYEAPSYLPWFPRVRFSLQPPALEYPIQSFLPTRPYLLGYWIPGTVLGPNLIQFDRQGIYNDPNHLPDIVVFDSNQEIKYAMDGSANGEPETHGTLYPWKRNQISDVDPFTGRVAVVPTVLSTDTVYGFYSYFEPDVVYTALDVNPVTNPNIKNTVICFYYRASSNPLQEIYHQVFNDSGPIAGMTNDPNPPTWSGQTPASGTVFAEMVVGVSFGIATFEMTDVRTRGGGLAPAYQTIPQADNFWDLGYLDGRPYPVGGALVVYLPTRILNTMTRDVVAGIVNSVLPMGTIAAIRYYDPEGNESV
Ga0224534_100000178	F030957	GAG	MNTSTQIQRVNSLTYADVAGLNVGLTRMQGEDSVAFLERCYLATTCRQDSTYEGEQDQVCLQLGLTQWAGIAVSSTSLSMTITVCIGLVTVVLNGVTYTIPTVTMAPDDYWVWRKISDVVNDLNAITGVTATLLGPDGPALQIAKQSNQFTVPSEAITMTDQMLAHANVIESSLTFSVAPGSYVFNPQTGELIISGTLPAGLSVAYQYTAMPYNIVCSELGLFGLVEPSLATVGVSSDNVLAYQLREVVQAVMNADPSYWAQ
Ga0224534_100000184	F042703	N/A	MPACPRRVAQQNIQYMQSAGIDTTGVQHLALYGTEGTAQAGNGSYLNPVYSDNLHAILIWIALLEDNGGVLDSQGNQLCPNLLDPSFNTSYIQCHSLPVTTRDNEAVYFQKGAFAANDQLEVTLSARQQMTTDGSALPVLIDGFAQKVNFIFNHPRTPLNKDLCPAGC
Ga0224534_100000194	F052342	AGGAG	MQVFFARWPSGRKVKWRSLTWAEFKKFDRQLDYDCPASVYCDVYRAVVLDGPPLDGDPVYQAPAGLVEWIARALLDSNPFNGEYKDVKRALEMKRIELKSSWLNSAKSIIAGIFRYTFEEIEQWDAEMFFERLAYAEFVSGRKLEPGNPDKLDAQHSGKKPSHPEGPPKPAKRELSPAQQKVVNRVVNSRK
Ga0224534_100000195	F086512	AGGAG	MSDQIKEQPQITPFEFLKTFPEAPSLEQIEQWKQQAPGARLRIWHSTDGKRVYVLRAIGGQELGQLQASLPPNIPPEKVQAEVQILMAIRCCVWTSSTIDHKLSDLALKGAGAGLPQTLQEIIYQLSDYMDPMDINRFSADL
Ga0224534_100000196	F042691	AGGA	VTIIAGSPMAPTASSNAVQQPPAPGSATPAAANAQNTPGGIVIPSLAPSYEWIYPNSTDGKYFTATQAQMYIGNLFIDELVNLQFAYQGNRIPMFGYCSRSADAFGTGRLLVQGQIAINFVTEGYLYTVLKEFSKIYTQPVQASATGQAGAQIASLVQQSQQITNAMQGALSPSATASYQAQLNIISQQIQSLAAQGGPDAINAAKQSATVQSDTPNAIVLNIPFDIHCELTGAGRTVERILRNCLLISNEQVYDQSGQTLLDCYGFVARSAN