Scaffold Ga0222728_1007454

Overview

Basic Information

• Taxon OID: 3300022508
• Scaffold ID: Ga0222728_1007454
• Source Dataset Name: Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-C-19-M (Metagenome Metatranscriptome)
• Source Dataset Category: Metatranscriptome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1345
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location

• Location Name: USA: Massachusetts
• Coordinates
  • Lat. (^o): 42.481016
  • Long. (^o): -72.178343

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009375	Metagenome / Metatranscriptome	319	Y
F056369	Metagenome / Metatranscriptome	137	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0222728_10074541	F009375	GGA	MGKRQEIAIGIALQTQVLRTCPIHNQLYCDDEESTDDENMGRAFAVAVELVRQHQPYAEEFHHDPHELTDLLSYTIGAAPASCPDCVSQRYPVHEEAGAPAPAGA
Ga0222728_10074543	F056369	AGAAG	MIDIEVTRLRRLRNTVLRARAVAATLDLDSARRDSVFSRGAVSCWQIARVITGLLRGHPYLSYQRGPSGLRGLYDRVSAGLQGGIARSRGRSLQAFSNELRRVARELDDARALTLSSDLSDTLGRSQTRIRGLIKELDAGARSEAGSRHETAPRVETRTGAVRNDSGSVAGNWPYLAI