Scaffold Ga0224712_10060880

Overview

Basic Information

• Taxon OID: 3300022467
• Scaffold ID: Ga0224712_10060880
• Source Dataset Name: Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5pm-2 (Metagenome Metatranscriptome) (v2)
• Source Dataset Category: Metatranscriptome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1504
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Corn, Switchgrass And Miscanthus Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location

• Location Name: USA: Michigan
• Coordinates
  • Lat. (^o): 42.3948
  • Long. (^o): -85.3738

Associated Families

Family	Category	Number of Sequences	3D Structure?
F026424	Metagenome / Metatranscriptome	198	N
F035981	Metagenome / Metatranscriptome	171	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0224712_100608801	F026424	AGGA	MMNLSLAQVKKFGTEIQSLKNKHEKALEKADHVIETGVDATLASATAFGLGVWQTRADHQRLLGVPVDLAVGLAAHAAGFMGMGGKAAPYLHSVGNGALAAHFHTVGRGVGKEMREKAGLPPVAIMGGEGPAEGGSNLSDEALLEMAKRRG
Ga0224712_100608802	F035981	AGG	MTNDESSGDEILGADEILGADEILGADEILAGEESSGDESSGDEVGLRLFRRKKKGPKKLDPVVQSRLAQSGVVVKSHGYSKGRSQSIGFESLAIQPGATVDVPANPQVLFKPKRLVYTGPANTFLIQDVKIGRSSQFVASGAQSADAYPPTSTVDNMELDTARPGVVITLRIQNTSGVAADFRATMFGQVAE