NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0224508_10747620

Scaffold Ga0224508_10747620


Overview

Basic Information
Taxon OID3300022413 Open in IMG/M
Scaffold IDGa0224508_10747620 Open in IMG/M
Source Dataset NameSediment microbial communities from San Francisco Bay, California, United States - SF_Jan12_sed_USGS_21
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)598
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Sediment → Unclassified → Sediment → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)37.79Long. (o)-122.36Alt. (m)Depth (m)17
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F062728Metagenome130N
F098265Metagenome / Metatranscriptome104N

Sequences

Protein IDFamilyRBSSequence
Ga0224508_107476201F098265N/ARSLMALRKITTIRCFANDPDKKATHSNSNWKPYVGKEPGDVVLSKDTRHQISVFANEDGSIDVSISERIAEDYTSGESIAANVRQGGMRKIAESMETPAAPKPQMALDDEVPF
Ga0224508_107476202F062728N/AMKSLSNLETAFHALDHCKDVLLERSRYGTVGDNFRQISEMGSMITGHKMTETQVCAFMIAVKLSRLSAKDEFGLNCNHIDSFVDIIGYSAI
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