NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181351_1077960

Scaffold Ga0181351_1077960


Overview

Basic Information
Taxon OID3300022407 Open in IMG/M
Scaffold IDGa0181351_1077960 Open in IMG/M
Source Dataset NameFreshwater viral communities from Lake Michigan, USA - Su13.VD.MM15.S.D
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusDraft

Scaffold Components
Scaffold Length (bps)1327
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location
Location NameUSA: Michigan
CoordinatesLat. (o)43.1881Long. (o)-86.344Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006842Metagenome363Y
F053128Metagenome141N
F069714Metagenome123N

Sequences

Protein IDFamilyRBSSequence
Ga0181351_10779601F069714GAGMKIDIKESVMPEYTKCITFDYEGREYMAEVYVGKHSSDYNLYQDNKKLEDKPAWLKKAEEDDEFSFLFFIDDLAWEYEQSKVSV
Ga0181351_10779602F006842GGAGMKATPVICGDHLVPISECDCVNYLQELKTSAKRLVQLAKERENLK
Ga0181351_10779603F053128GAGGMKGYFVIDRQRTGWKEGYLWKSIKEIADSIRDYDDYRELEVSNLTHSQVCELWDFEYHRITPANCNKYSVRPSELTREYL

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