NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0181351_1031912

Scaffold Ga0181351_1031912


Overview

Basic Information
Taxon OID3300022407 Open in IMG/M
Scaffold IDGa0181351_1031912 Open in IMG/M
Source Dataset NameFreshwater viral communities from Lake Michigan, USA - Su13.VD.MM15.S.D
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusDraft

Scaffold Components
Scaffold Length (bps)2240
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location
Location NameUSA: Michigan
CoordinatesLat. (o)43.1881Long. (o)-86.344Alt. (m)Depth (m)5
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F014837Metagenome / Metatranscriptome259Y
F016141Metagenome / Metatranscriptome249Y
F024095Metagenome / Metatranscriptome207Y
F048833Metagenome / Metatranscriptome147Y

Sequences

Protein IDFamilyRBSSequence
Ga0181351_10319121F048833N/AVLNFSVGARPFATIVKPFQYAPPPGSPLDLANTYVNQISAAPVPAAGAAQVVGVPWVTQTKMRSNVYFTDPNILIEAEQQFNVKLNFPSGVVPVLATNVVNDSTNPLKVGVILDGLLLRPVQ
Ga0181351_10319122F016141AGGAMTPEIIDSLQKRFGSADFSRYQVVRGQKYDFCRLLAAGTNSVSFFSNPIGATDPGAGATLFKTLEQTNLVKNASFGQEYFALTQIRTYANFVCQSRQGFTTGTNFTYRGYTALADSAMEKLQTVLNNGVLEISFAQKLYYQIARPFIQCPAGFGIDVQSLASSRTGNAAETQPEGTNWLARPDYRATAVYNIDPIQIIEPEIQIQAAINFPNGNTPNFTNTALDTANGTQTPAIELGLIFDGYVIRPSQ
Ga0181351_10319123F024095GGCGGMDNTNSLPFVYVVTASLSAAVGATSSTTLIMQADSRFELMGIFGTGGNAATTEDSLQYPNSFTVSIRDQTTGRDLMSAPVPQRVLCGNAFKQFLEKRGIIFEPQSNLLFTFTNLTAATNSITLALHGYKIIL
Ga0181351_10319124F014837AGGMIERSINPKPRFVTLTSNPSTGALVGVPLATLYNAAFFRFPQDSIIHYVMVNSTLTCNGAASQAIGSIAYGQGNQTIGESFNPGFPNFADNVIWRDELLNPAAGVISDSKSNQITMNEFFVHTDTGIGIYVNGINASVNINATIAFNPIAEWINFREPTSGARI

 ⦗Top⦘



© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.