Basic Information | |
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Taxon OID | 3300022407 Open in IMG/M |
Scaffold ID | Ga0181351_1031912 Open in IMG/M |
Source Dataset Name | Freshwater viral communities from Lake Michigan, USA - Su13.VD.MM15.S.D |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Draft |
Scaffold Components | |
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Scaffold Length (bps) | 2240 |
Total Scaffold Genes | 4 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 3 (75.00%) |
Novel Protein Genes | 4 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (75.00%) |
Associated Families | 4 |
Taxonomy | |
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Not Available | (Source: ) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: Michigan | |||||||
Coordinates | Lat. (o) | 43.1881 | Long. (o) | -86.344 | Alt. (m) | Depth (m) | 5 | Location on Map |
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Family | Category | Number of Sequences | 3D Structure? |
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F014837 | Metagenome / Metatranscriptome | 259 | Y |
F016141 | Metagenome / Metatranscriptome | 249 | Y |
F024095 | Metagenome / Metatranscriptome | 207 | Y |
F048833 | Metagenome / Metatranscriptome | 147 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0181351_10319121 | F048833 | N/A | VLNFSVGARPFATIVKPFQYAPPPGSPLDLANTYVNQISAAPVPAAGAAQVVGVPWVTQTKMRSNVYFTDPNILIEAEQQFNVKLNFPSGVVPVLATNVVNDSTNPLKVGVILDGLLLRPVQ |
Ga0181351_10319122 | F016141 | AGGA | MTPEIIDSLQKRFGSADFSRYQVVRGQKYDFCRLLAAGTNSVSFFSNPIGATDPGAGATLFKTLEQTNLVKNASFGQEYFALTQIRTYANFVCQSRQGFTTGTNFTYRGYTALADSAMEKLQTVLNNGVLEISFAQKLYYQIARPFIQCPAGFGIDVQSLASSRTGNAAETQPEGTNWLARPDYRATAVYNIDPIQIIEPEIQIQAAINFPNGNTPNFTNTALDTANGTQTPAIELGLIFDGYVIRPSQ |
Ga0181351_10319123 | F024095 | GGCGG | MDNTNSLPFVYVVTASLSAAVGATSSTTLIMQADSRFELMGIFGTGGNAATTEDSLQYPNSFTVSIRDQTTGRDLMSAPVPQRVLCGNAFKQFLEKRGIIFEPQSNLLFTFTNLTAATNSITLALHGYKIIL |
Ga0181351_10319124 | F014837 | AGG | MIERSINPKPRFVTLTSNPSTGALVGVPLATLYNAAFFRFPQDSIIHYVMVNSTLTCNGAASQAIGSIAYGQGNQTIGESFNPGFPNFADNVIWRDELLNPAAGVISDSKSNQITMNEFFVHTDTGIGIYVNGINASVNINATIAFNPIAEWINFREPTSGARI |
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