NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181351_1024549

Scaffold Ga0181351_1024549


Overview

Basic Information
Taxon OID3300022407 Open in IMG/M
Scaffold IDGa0181351_1024549 Open in IMG/M
Source Dataset NameFreshwater viral communities from Lake Michigan, USA - Su13.VD.MM15.S.D
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusDraft

Scaffold Components
Scaffold Length (bps)2558
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location
Location NameUSA: Michigan
CoordinatesLat. (o)43.1881Long. (o)-86.344Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008495Metagenome / Metatranscriptome332N
F018136Metagenome / Metatranscriptome236N
F020694Metagenome / Metatranscriptome222N

Sequences

Protein IDFamilyRBSSequence
Ga0181351_10245492F008495GGAMGCRKISGSILYLLNILIIYHLRLGDIARCLPIAKHFADRGHEVTFECMAEYHGLFAMVDYCRPIYPQNDHSGFDRIINLQIWPDLHEDFCASPLGWSDYVYGLLPEGKDIDRQIVLNSPAIVTPPELKSWVLCFPTGYSQDKKIEPRDVMAVAHHVANGRPVLCAGKAAHGMAEFDSIEYMCAYIRDANEVVTINTSTSILASALRKSWVHISDSPKHDFTHPNQRRIERKF
Ga0181351_10245493F020694N/AMLDIFTSDLAAMLDELPVVVTFGDATFVANRTTYRRDNSLADGGFMNSASMTLTAPYSTVVQTISLGDILTVGGIRLRVTSADLSQDAVSVDFSLEDINK
Ga0181351_10245494F018136GAGGMITDATYTLTLEKALTDTFVLALQQEMQSALVVTAAENFGTMTLPACFVKCTRQRESIIDSAIFQFSVDIALIVQADDMDQMAMENLWSQVLCVSHDITGLKTKLNAVRPQYAFVYGILRDGPVSLSSNERHFERSVTITVHAALFAS
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