Scaffold Ga0181351

Basic Information
Taxon OID	3300022407 Open in IMG/M
Scaffold ID	Ga0181351_1010205 Open in IMG/M
Source Dataset Name	Freshwater viral communities from Lake Michigan, USA - Su13.VD.MM15.S.D
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Draft

Basic Information

Taxon OID

3300022407 Open in IMG/M

Scaffold ID

Ga0181351_1010205 Open in IMG/M

Source Dataset Name

Freshwater viral communities from Lake Michigan, USA - Su13.VD.MM15.S.D

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Draft

Scaffold Components
Scaffold Length (bps)	3797
Total Scaffold Genes	15 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	7 (46.67%)
Novel Protein Genes	7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	4 (57.14%)
Associated Families	7

Scaffold Components

Scaffold Length (bps)

3797

Total Scaffold Genes

15 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

7 (46.67%)

Novel Protein Genes

7 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

4 (57.14%)

Associated Families

Taxonomy
All Organisms → Viruses → Predicted Viral	(Source: DeepVirFinder)

Taxonomy

All Organisms → Viruses → Predicted Viral

(Source: DeepVirFinder)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location
Location Name	USA: Michigan
Coordinates	Lat. (^o)	43.1881	Long. (^o)	-86.344	Alt. (m)	Depth (m)	5
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Michigan

Coordinates

Lat. (^o)

43.1881

Long. (^o)

-86.344

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F013514	Metagenome / Metatranscriptome	270	Y
F016800	Metagenome / Metatranscriptome	244	Y
F019061	Metagenome / Metatranscriptome	232	Y
F047649	Metagenome / Metatranscriptome	149	N
F057309	Metagenome / Metatranscriptome	136	Y
F072267	Metagenome / Metatranscriptome	121	Y
F085383	Metagenome / Metatranscriptome	111	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0181351_101020511	F016800	AGGA	MLDAFTDYPIPSYGDVEGKQAPIRKATILTYDRNKYCDVLVYQIDGDGDLRGTVVNFKCFYLYKNEARLDDGIPFTYEELETLPWTEISFPHSI
Ga0181351_101020513	F085383	N/A	MTDFLKLHKLCILELLIALDEDVVDWRNYPKLWEAVKLADKTLDIWAGDNLKQMRDELIEELK
Ga0181351_10102052	F019061	N/A	MTEPTDTEILEFLLNQFHPHNLQMNGESDWVFMNTGFPMSRAKGKSARDAVIAAMRAK
Ga0181351_10102055	F072267	GGGGG	MTERIGYKLNPNKLKGAPQSILPYFVGAFYYTEEFEYFDVIKPYLDIPEPRKSLEEIQQELDEKIDDLIERTKNSFYKSKYIAETLYDTKFNRIIENFEYAKEHGQFPPKLTYSNLIATGSNITSSFVIKQGNNHEGYYTFGTGFVRFYMPTKPNAITRWFMDKCVSIRWVDEK
Ga0181351_10102056	F047649	GGTGG	MRYYETRTYEHQCDFDAKNRAEKASQDYYNKWINLRKEVRNLVREQNLTITPDFAKLIGL
Ga0181351_10102058	F057309	N/A	MMNPLLQKYEELYGKKEKPKFPRIEDYEGEETFADELKKSKPPILKSYDLDDLKTSFQQVAEQLQNDEAQVISMNMEFGDHMNKITFEVYVYKP
Ga0181351_10102059	F013514	GAGG	MSINLEELQKYLDDNNTTLEEYMRANMITDEDRKYFDKIWVDAIYKNFGEDT

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0181351_1010205

Overview

Ecosystem & Geography

Associated Families

Sequences