Basic Information | |
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Taxon OID | 3300022407 Open in IMG/M |
Scaffold ID | Ga0181351_1008456 Open in IMG/M |
Source Dataset Name | Freshwater viral communities from Lake Michigan, USA - Su13.VD.MM15.S.D |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Draft |
Scaffold Components | |
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Scaffold Length (bps) | 4107 |
Total Scaffold Genes | 9 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 5 (55.56%) |
Novel Protein Genes | 4 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (50.00%) |
Associated Families | 4 |
Taxonomy | |
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Not Available | (Source: ) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: Michigan | |||||||
Coordinates | Lat. (o) | 43.1881 | Long. (o) | -86.344 | Alt. (m) | Depth (m) | 5 | Location on Map |
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Family | Category | Number of Sequences | 3D Structure? |
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F012113 | Metagenome / Metatranscriptome | 283 | Y |
F023059 | Metagenome | 211 | Y |
F049401 | Metagenome | 146 | N |
F086801 | Metagenome | 110 | N |
Protein ID | Family | RBS | Sequence |
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Ga0181351_10084562 | F086801 | N/A | MTSVKLLASNEFTEKHAYHLSQIQLATIEAIETKYRAGQAEHGASGPLWAMPTISVTENAIAESIDQISYLMTLRGQIKIIYELARLGMEDEDLCATTARDSCKKIFDMMGGIK |
Ga0181351_10084564 | F049401 | AGG | MLTLIIGGGLVLSSCASTNYTYTAPSPADIPDLIMEWDRLERTIGLVRPEFREQYAKALKALSNAIAEQERWRARAENK |
Ga0181351_10084565 | F023059 | AGAAG | MFEAAIASLAGVVGILFWWLKNRAKTRTERDDAEIEYRRRVRDADLDNWWRSRP |
Ga0181351_10084566 | F012113 | N/A | MQQILTFIQSQDLFAWVGALVALLSAVIAVASLIPGDKPEATLTKIVSVISKFSVKK |
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