Scaffold Ga0181351_1006957

Overview

Basic Information

• Taxon OID: 3300022407
• Scaffold ID: Ga0181351_1006957
• Source Dataset Name: Freshwater viral communities from Lake Michigan, USA - Su13.VD.MM15.S.D
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 4428
• Total Scaffold Genes: 13
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (15.38%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (20.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location

• Location Name: USA: Michigan
• Coordinates
  • Lat. (^o): 43.1881
  • Long. (^o): -86.344
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F016783	Metagenome / Metatranscriptome	244	Y
F017988	Metagenome / Metatranscriptome	237	Y
F034178	Metagenome / Metatranscriptome	175	Y
F044369	Metagenome / Metatranscriptome	154	Y
F095363	Metagenome	105	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0181351_100695711	F016783	N/A	MKNTLLFLGVALVMSACSTANYATHAIHNTPTTTRQALIYDNHVVIITKTKMSVEDYNKIVAVTVQNKEERK
Ga0181351_100695712	F095363	AGG	MKKLLTLVALLATFSSFGQLQKWHKVTNYASTSAMVWSTIDQQTLFFDNHDMRAQNAVWDIVLDESTGEGFITSGSITYRVNKTTIEERDGVSMVVMDSYNEKIQAQVLIIASTIEGKFKLGVYVEAHKKVYYFYE
Ga0181351_10069573	F034178	N/A	MKEGDKVTSTKYPDRVFKLVWYKEGDNTCAVQDETLRAVVKVSTLGLVTQE
Ga0181351_10069575	F017988	N/A	MKFLELTGFGNKHKHIISLRSISDIEFQSNYTHISLNNGNSVNVVETQKQITDIITYHQGEIVSVEYLDDLEAQIAAYEEMEADRFAVGEDNELPF
Ga0181351_10069578	F044369	N/A	MSKIEHILHKAHNKGIYHETMSFAQEVKKEDPKIEMEDRYEIAYERAKKSLLKSSPPLNP