Scaffold Ga0181351_1003003

Overview

Basic Information

• Taxon OID: 3300022407
• Scaffold ID: Ga0181351_1003003
• Source Dataset Name: Freshwater viral communities from Lake Michigan, USA - Su13.VD.MM15.S.D
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 6016
• Total Scaffold Genes: 18
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 11 (61.11%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location

• Location Name: USA: Michigan
• Coordinates
  • Lat. (^o): 43.1881
  • Long. (^o): -86.344
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F023585	Metagenome	209	Y
F023833	Metagenome	208	Y
F033350	Metagenome	177	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0181351_100300312	F023833	AGGA	MKSHSDQLQEIVNDAMRKAASSERERCADLVQRLADGTEDQVIRDILNEVVVAVRRLGDE
Ga0181351_100300313	F033350	GGAGG	MNVDVDVPKVKWSMLEWKSPEEKPKSDERVLMDIGGEVSVGRYVDGSFVSRSWGHSENDVRLWASWPKAPKW
Ga0181351_100300315	F023585	AGGA	MSVKRLKLVDEFHAIVSKRLKDLFKDFDHAKRENYKDIISHLDYSHRITKELLDRAKKYQKRDLEKAKK