NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181351_1002715

Scaffold Ga0181351_1002715


Overview

Basic Information
Taxon OID3300022407 Open in IMG/M
Scaffold IDGa0181351_1002715 Open in IMG/M
Source Dataset NameFreshwater viral communities from Lake Michigan, USA - Su13.VD.MM15.S.D
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusDraft

Scaffold Components
Scaffold Length (bps)6242
Total Scaffold Genes13 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (15.38%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Patescibacteria group → Parcubacteria group → Candidatus Falkowbacteria → Candidatus Falkowbacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location
Location NameUSA: Michigan
CoordinatesLat. (o)43.1881Long. (o)-86.344Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F016114Metagenome / Metatranscriptome249Y
F036110Metagenome / Metatranscriptome170N
F043752Metagenome / Metatranscriptome155N
F051646Metagenome143Y

Sequences

Protein IDFamilyRBSSequence
Ga0181351_10027151F043752GGAMELQKRIDQLREQGFNNFALQDRPGKLTKASCGRFWPNNKEKAGWANNGEEV
Ga0181351_100271511F016114N/AMGNRYWDAAFFDSRDVETINEMAALARRMLISQRELQRDELLRLKMKYPHLTTKD
Ga0181351_100271513F036110N/AKNNFMEILLFAATVAVSLVGFLLARELNRTSEELKHLRQDVFRLSVDLAKLQERLDGLI
Ga0181351_10027152F051646N/AMSWQIPTQIEQDIIAGKAKYQTFQTGNGGQSILQVPPNSFVVIFGYDFSPAGGGFVSQNGQFYFNNNILTPDSIRFFETQQISFYTGTDFYPFIHHVDVKTSAAPFNIDASDLGEIQVNNYHIFQEVDNTPIARQVYITSVNDVTITHGLILNAIPATTGTIPVTNRTPGFLTYGGSPQLIQAQTNYGPVLTPQQFMQPSPKDFQDFGLGLLPGNPTNQAFATPDATNGLLEANAHLLAIGGDTFVKAAATNYYLCMHYAIYSKTIPEQRG
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