Scaffold Ga0224504_10018930

Overview

Basic Information

• Taxon OID: 3300022308
• Scaffold ID: Ga0224504_10018930
• Source Dataset Name: Sediment microbial communities from San Francisco Bay, California, United States - SF_Oct11_sed_USGS_24
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2660
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (40.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Prokaryotic dsDNA virus sp. (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Sediment → Unclassified → Sediment → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 37.7
  • Long. (^o): -122.34
  • Depth (m): 11

Associated Families

Family	Category	Number of Sequences	3D Structure?
F028038	Metagenome / Metatranscriptome	193	Y
F029926	Metagenome / Metatranscriptome	187	Y
F085676	Metagenome / Metatranscriptome	111	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0224504_100189303	F029926	N/A	MRIDQVVKPNSKVMTKLAQDAIDKITLDASKGKFQNGRSGYSYKNDTYRKYKANSMQGKNGKLKAFRNQSTDTQTSFVNMKLTGRTLRSMRGSGKTDTAIITYDKGEIVLGNQKRGYDIYDLSDKNQEFIAERFGKELLDRNIKKYVSKTTIIK
Ga0224504_100189304	F028038	N/A	VSKLANLDFYNKEIENIQQQLIDKLDNLVVGLGRVTDTELMQIAKQIDFFAEMETLGFTKLMNRVGKTFDDEIARVFAELSKRELGAVSVASIETLRELKNFEMTYLTNGVRQYSDQLKTAMLRGIITGESNIQIMNNINSTFGVGTYISSSETSFLINDAFSRFSNTTRAKAFEEFPEVKFQYIGTSDNKTREVCQRALQEPPLTREEIDALGYVDFANRGGYNCRHDWVRV
Ga0224504_100189305	F085676	N/A	KRICEVSGGINLGDQFSIDFAEREVPMSTDEEIKYYSWAFQNDLETRQSYLRKKNPDLQEEEITAIVEQIDAEQPQEADQTQSIIDRIGEQVG