Scaffold Ga0187833_10018262

Overview

Basic Information

• Taxon OID: 3300022225
• Scaffold ID: Ga0187833_10018262
• Source Dataset Name: Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP2014_SV_400_PacBio MetaG (Illumina Assembly)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5556
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (71.43%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Planctomycetales → Planctomycetaceae → Gimesia → unclassified Gimesia → Gimesia sp. (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Seawater → Microbial And Viral Regulation Of Community Carbon Cycling Across Diverse Low-Oxygen Zones

Source Dataset Sampling Location

• Location Name: Pacific Ocean: Eastern Tropical North Pacific
• Coordinates
  • Lat. (^o): 20.3333
  • Long. (^o): -107.0
  • Depth (m): 400

Associated Families

Family	Category	Number of Sequences	3D Structure?
F030569	Metagenome	185	Y
F030896	Metagenome / Metatranscriptome	184	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0187833_100182624	F030896	AGGAGG	MKTSVINKNSGDYGKFTNVLNAKDIAFASEAWQDLVRNGELTSLAVVDATVDAGITLVKNYEYTSGWLADATSAIVLPSADEGVFIAWVQTADADAANAMTITAASGDTYEPYQEISIGTGIPAQQDSSVAADSVITITPSATNGGWGMTGSYILFYCKNQGEWLVKVKGIKEGTGATSTIAFS
Ga0187833_100182626	F030569	N/A	VLKTKCQHCDKPNPENWFYCRDCGRRATPPKFTTNSFIISEVGKRTDVEFNTISYEESFEKMNKADSRWKGF