Scaffold Ga0224506_10067660

Overview

Basic Information

• Taxon OID: 3300022221
• Scaffold ID: Ga0224506_10067660
• Source Dataset Name: Sediment microbial communities from San Francisco Bay, California, United States - SF_Jan12_sed_USGS_8_1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1762
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Archaea → Asgard group → Candidatus Thorarchaeota → Candidatus Thorarchaeota archaeon (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Sediment → Unclassified → Sediment → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 38.03
  • Long. (^o): -122.15
  • Depth (m): 14

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006410	Metagenome	374	Y
F012730	Metagenome	278	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0224506_100676601	F012730	GGA	MKGKTFTEIRVTEKLCEVCDKPIRAEETILKTVQITDYDSYSNLLTRQRAHDRVEVDLEENKIYVYHHDYPGDVHP
Ga0224506_100676603	F006410	GAGG	MAEKPKISPEKAKEMQERSRERSLILNQLKDQGPQTLDELSKVTGIGKEKLFKHMIAMRQFGKIAIAGERDNQLVYGLPEG